Factsheet for PGSC0003DMT400062866

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113890.1.1	Tomato	nucleus	90.43	90.43
VIT_14s0066g01860.t01	Wine grape	nucleus	31.3	30.0
PGSC0003DMT400040327	Potato	nucleus	27.39	25.4
KRH74690	Soybean	nucleus	25.22	24.07
KRH69467	Soybean	nucleus	24.78	23.17
PGSC0003DMT400037771	Potato	nucleus	19.57	21.23
PGSC0003DMT400037720	Potato	nucleus	19.13	20.47
PGSC0003DMT400038786	Potato	cytosol, mitochondrion, nucleus	10.43	18.75
PGSC0003DMT400013992	Potato	nucleus	16.09	16.02
PGSC0003DMT400029797	Potato	nucleus	16.09	14.34
PGSC0003DMT400060839	Potato	nucleus	12.17	11.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400062866	EnsemblPlantsGene:PGSC0003DMG402024472	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF252	PFscan:PS50157
PGSC:PGSC0003DMG402024472	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI0002959978	UniProt:M1C9N8
MapMan:15.5.15	:	:	:	:	:

Description

C2H2L domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG402024472]

Coordinates

chr3:+:53728218..53729118

Molecular Weight (calculated)

25766.3 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.523

Length

230 amino acids

Sequence
(BLAST)

001: MDEALYQKST NLNLLSTGRN GTDNVCCKTT TSDKKLRIFG FEVNPCSNDI ICSKSESDQS ISSSETFADE RLVEKTSICM NSSSIVLPNP NENLRNLSCS
101: VVSEFKYECH FCLKKFTNSR ALGGHQNAHR KERLKKKRMD LEAKRASSML HLYSLIRNTG VIYPYYSLSH QNLFVSGSSI INFSSVYHYQ NGTHPLYVAV
201: DAHPQGELQL QNNCSTSVQG GESRGRDLLS

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.