Factsheet for PGSC0003DMT400037720

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009180.1.1	Tomato	nucleus	94.42	94.42
PGSC0003DMT400037771	Potato	nucleus	74.88	75.94
VIT_01s0011g03780.t01	Wine grape	nucleus	72.09	70.14
AT1G68360.1	Thale cress	nucleus	55.81	49.18
CDX96028	Canola	nucleus	53.49	48.73
CDY01910	Canola	nucleus	53.49	48.32
VIT_14s0006g02730.t01	Wine grape	cytosol, mitochondrion, nucleus	46.98	48.1
Bra004300.1-P	Field mustard	nucleus	52.56	47.88
CDX81505	Canola	nucleus	51.63	47.84
CDY67985	Canola	nucleus	52.09	47.66
Bra033944.1-P	Field mustard	nucleus	49.77	46.12
KRH01734	Soybean	nucleus	38.14	45.81
KRH46944	Soybean	nucleus	36.28	45.35
AT1G67030.1	Thale cress	nucleus	39.07	42.64
CDX96114	Canola	nucleus	34.88	39.27
Bra004200.1-P	Field mustard	nucleus	34.88	39.27
CDY01779	Canola	nucleus	35.35	38.78
PGSC0003DMT400038786	Potato	cytosol, mitochondrion, nucleus	18.6	31.25
PGSC0003DMT400040327	Potato	nucleus	28.84	25.0
PGSC0003DMT400060839	Potato	nucleus	24.65	22.27
PGSC0003DMT400013992	Potato	nucleus	23.72	22.08
PGSC0003DMT400029797	Potato	nucleus	23.72	19.77
PGSC0003DMT400062866	Potato	nucleus	20.47	19.13

Protein Annotations

EnsemblPlants:PGSC0003DMT400037720	EnsemblPlantsGene:PGSC0003DMG400014553	EntrezGene:102581382	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF237
PFscan:PS50157	PGSC:PGSC0003DMG400014553	RefSeq:XP_006344147.1	ScanProsite:PS00028	SUPFAM:SSF57667	UniParc:UPI0002960DA1
UniProt:M1B5S5	MapMan:15.5.15	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014553]

Coordinates

chr5:+:3069072..3069916

Molecular Weight (calculated)

23408.2 Da

IEP (calculated)

8.348

GRAVY (calculated)

-0.639

Length

215 amino acids

Sequence
(BLAST)

001: MAELEFQSKH NNNRTSNRRL KLFGFNVTED QEQEVESTKT SSGSPESGSF PASDGRKYEC QYCCREFANS QALGGHQNAH KKERQQLKRA QIQASRNAYM
101: RNPIISAFAP PSHLLAPSGS VMVPPTSPSW VYVPRSAPPF HVSHGCVFPN STGARGVGNL HYTGSVEESS LTSVGPQQVK AHSARVDGPS LSRFSGMDAG
201: PNFDDAFGLD LHLSL

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.