Factsheet for PGSC0003DMT400037771

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009170.1.1	Tomato	nucleus	93.87	93.87
PGSC0003DMT400037720	Potato	nucleus	75.94	74.88
VIT_01s0011g03780.t01	Wine grape	nucleus	66.98	64.25
CDX96028	Canola	nucleus	53.3	47.88
AT1G68360.1	Thale cress	nucleus	54.72	47.54
CDX81505	Canola	nucleus	51.89	47.41
CDY67985	Canola	nucleus	52.36	47.23
CDY01910	Canola	nucleus	52.83	47.06
Bra004300.1-P	Field mustard	nucleus	52.36	47.03
Bra033944.1-P	Field mustard	nucleus	50.0	45.69
VIT_14s0006g02730.t01	Wine grape	cytosol, mitochondrion, nucleus	43.87	44.29
KRH46944	Soybean	nucleus	34.91	43.02
KRH01734	Soybean	nucleus	36.32	43.02
AT1G67030.1	Thale cress	nucleus	39.62	42.64
CDX96114	Canola	nucleus	36.79	40.84
Bra004200.1-P	Field mustard	nucleus	36.79	40.84
CDY01779	Canola	nucleus	36.79	39.8
PGSC0003DMT400038786	Potato	cytosol, mitochondrion, nucleus	18.87	31.25
PGSC0003DMT400040327	Potato	nucleus	26.42	22.58
PGSC0003DMT400060839	Potato	nucleus	24.06	21.43
PGSC0003DMT400013992	Potato	nucleus	22.17	20.35
PGSC0003DMT400062866	Potato	nucleus	21.23	19.57
PGSC0003DMT400029797	Potato	nucleus	22.17	18.22

Protein Annotations

EnsemblPlants:PGSC0003DMT400037771	EnsemblPlantsGene:PGSC0003DMG400014574	EntrezGene:102581712	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF237
PFAM:PF13912	PFscan:PS50157	PGSC:PGSC0003DMG400014574	RefSeq:XP_006344148.1	ScanProsite:PS00028	SUPFAM:SSF57667
UniParc:UPI0002961BBF	UniProt:M1B5W1	MapMan:15.5.15	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014574]

Coordinates

chr5:-:3081069..3082137

Molecular Weight (calculated)

23006.7 Da

IEP (calculated)

7.301

GRAVY (calculated)

-0.655

Length

212 amino acids

Sequence
(BLAST)

001: MAELEYRAGS NTSGRLKLFG FNVIEDQEQE VESTKTSSGS PESGEFPAID GRKYECQYCS REFANSQALG GHQNAHKKER QQLKRAQIQA SRNAYMRNPI
101: ISAFAPPSHL FTPPGTMMYP AGSNPSWVYV PRAPPSFHVS HVGRGVANFH YTGDMAEPNL TSVGPQHVKA HGGRVDGNNG PSLSSFSRPD FGPNCDDPFG
201: LDLHLSLAPA GS

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.