Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96028 | Canola | nucleus | 99.15 | 99.15 |
| CDY01910 | Canola | nucleus | 97.46 | 96.64 |
| Bra033944.1-P | Field mustard | nucleus | 82.63 | 84.05 |
| AT1G68360.1 | Thale cress | nucleus | 84.32 | 81.56 |
| VIT_01s0011g03780.t01 | Wine grape | nucleus | 50.42 | 53.85 |
| PGSC0003DMT400037720 | Potato | nucleus | 47.88 | 52.56 |
| PGSC0003DMT400037771 | Potato | nucleus | 47.03 | 52.36 |
| Solyc05g009170.1.1 | Tomato | nucleus | 47.03 | 52.36 |
| Solyc05g009180.1.1 | Tomato | nucleus | 46.19 | 50.7 |
| KRG90856 | Soybean | nucleus | 49.15 | 41.28 |
| KRH35924 | Soybean | nucleus | 49.15 | 40.99 |
| Bra004200.1-P | Field mustard | nucleus | 30.51 | 37.7 |
| Bra031715.1-P | Field mustard | nucleus | 19.49 | 22.55 |
| Bra028724.1-P | Field mustard | nucleus | 17.37 | 22.53 |
| Bra018438.1-P | Field mustard | nucleus | 19.49 | 22.44 |
| Bra000245.1-P | Field mustard | nucleus | 22.03 | 20.97 |
| Bra004660.1-P | Field mustard | nucleus | 21.61 | 20.4 |
| Bra003317.1-P | Field mustard | nucleus | 20.34 | 20.34 |
| Bra007378.1-P | Field mustard | nucleus | 21.61 | 20.16 |
| Bra016900.1-P | Field mustard | nucleus | 20.76 | 19.29 |
Protein Annotations
| EnsemblPlants:Bra004300.1 | EnsemblPlants:Bra004300.1-P | EnsemblPlantsGene:Bra004300 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF237 | PFscan:PS50157 | SEG:seg |
| UniParc:UPI000254173F | UniProt:M4CJB6 | MapMan:15.5.15 | : | : | : |
Description
AT1G68360 (E=8e-086) | zinc finger protein-related
Coordinates
chrA07:-:17842326..17843036
Molecular Weight (calculated)
25204.2 Da
IEP (calculated)
8.939
GRAVY (calculated)
-0.678
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MEELNFRSKT STSRLRLFGF SVDGEEDFFE QTVKPNQSSD SPEHNEFPAG SSGRSGGGVR SRGGGGGERK YECQYCCREF GNSQALGGPQ NAHKKERQQL
101: KRAQLQATRN AAAKYSNVGS ASPLLRNPMV SAFAHRPHHL SSTVSPPGGG GSWMYLPRVS PSQLHVSHGC VVQDGAGAGT NGFSYESGFG FNGAQMRHVQ
201: AHGPRPLVNG FSREVGSTFD DGLGLDLHLS LAPAGH
101: KRAQLQATRN AAAKYSNVGS ASPLLRNPMV SAFAHRPHHL SSTVSPPGGG GSWMYLPRVS PSQLHVSHGC VVQDGAGAGT NGFSYESGFG FNGAQMRHVQ
201: AHGPRPLVNG FSREVGSTFD DGLGLDLHLS LAPAGH
001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
Arabidopsis Description
GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.