CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96028	Canola	nucleus	97.48	98.31
Bra004300.1-P	Field mustard	nucleus	96.64	97.46
CDX81505	Canola	nucleus	82.77	84.91
CDY67985	Canola	nucleus	82.35	83.4
AT1G68360.1	Thale cress	nucleus	84.87	82.79
VIT_01s0011g03780.t01	Wine grape	nucleus	50.42	54.3
PGSC0003DMT400037720	Potato	nucleus	48.32	53.49
PGSC0003DMT400037771	Potato	nucleus	47.06	52.83
Solyc05g009170.1.1	Tomato	nucleus	47.06	52.83
Solyc05g009180.1.1	Tomato	nucleus	47.06	52.09
KRG90856	Soybean	nucleus	48.74	41.28
KRH35924	Soybean	nucleus	48.74	40.99
CDY01779	Canola	nucleus	32.77	39.8
CDX96114	Canola	nucleus	31.51	39.27
CDY34889	Canola	nucleus	19.75	23.27
CDY20951	Canola	nucleus	19.75	22.93
CDY20629	Canola	nucleus	19.75	22.82
CDY67406	Canola	nucleus	19.75	22.82
CDY04997	Canola	nucleus	16.81	22.35
CDY22545	Canola	nucleus	23.53	22.31
CDY14074	Canola	nucleus	16.81	22.22
CDY35394	Canola	nucleus	22.69	21.77
CDY57240	Canola	nucleus	21.43	21.34
CDX71975	Canola	nucleus	22.27	21.03
CDY06054	Canola	nucleus	22.27	20.95
CDX79901	Canola	nucleus	21.43	20.4
CDY56241	Canola	nucleus	18.91	20.09
CDY14805	Canola	nucleus	21.43	19.92
CDY06892	Canola	nucleus	21.01	19.68
CDY64571	Canola	nucleus	21.43	16.19

Protein Annotations

EnsemblPlants:CDY01910	EnsemblPlantsGene:GSBRNA2T00113109001	Gene3D:3.30.160.60	GO:A0A078EIL5	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF237
PFscan:PS50157	ProteinID:CDY01910	ProteinID:CDY01910.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667
UniParc:UPI0004EF30DF	MapMan:15.5.15	:	:	:	:

Description

BnaC06g29500D

Coordinates

chrLK031929:-:1150747..1151463

Molecular Weight (calculated)

25422.4 Da

IEP (calculated)

8.939

GRAVY (calculated)

-0.699

Length

238 amino acids

Sequence
(BLAST)

001: MEELNFRSKT STSRLRLFGF SVDGEEDFFE QTVKPNQSSD SPEHNEFPAG SSGRSGGGVR SRGGGGGERK YECQYCCREF GNSQALGGHQ NAHKKERQQL
101: KRAQLQATRN ATAKYSNLGS ASPLLRNPMV SAFAPRPHHL SSTVSPPGGG GSWMYLPRVS PSQLHVSHGC VIQDGSGAGA GTNGFSYESG FGFNGAQMRH
201: VQAHGPRPLV NGFSREVGST FDDGLGLDLH LSLSPAGH

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.