Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g006310.1.1 | Tomato | nucleus | 93.95 | 93.2 |
| Bra031715.1-P | Field mustard | nucleus | 31.05 | 37.75 |
| CDY34889 | Canola | nucleus | 30.65 | 37.62 |
| AT1G10480.1 | Thale cress | nucleus | 31.85 | 37.44 |
| CDY20629 | Canola | nucleus | 31.05 | 37.38 |
| CDY67406 | Canola | nucleus | 31.05 | 37.38 |
| Bra018438.1-P | Field mustard | nucleus | 30.24 | 36.59 |
| CDY20951 | Canola | nucleus | 30.24 | 36.59 |
| PGSC0003DMT400037720 | Potato | nucleus | 25.0 | 28.84 |
| PGSC0003DMT400062866 | Potato | nucleus | 25.4 | 27.39 |
| PGSC0003DMT400037771 | Potato | nucleus | 22.58 | 26.42 |
| PGSC0003DMT400038786 | Potato | cytosol, mitochondrion, nucleus | 12.9 | 25.0 |
| PGSC0003DMT400013992 | Potato | nucleus | 19.35 | 20.78 |
| PGSC0003DMT400060839 | Potato | nucleus | 18.55 | 19.33 |
| PGSC0003DMT400029797 | Potato | nucleus | 18.55 | 17.83 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400040327 | EnsemblPlantsGene:PGSC0003DMG400015611 | EntrezGene:102600844 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF252 |
| PFAM:PF13912 | PFscan:PS50157 | PGSC:PGSC0003DMG400015611 | RefSeq:XP_006355929.1 | ScanProsite:PS00028 | SEG:seg |
| SUPFAM:SSF57667 | UniParc:UPI00029659DF | UniProt:M1B9Q8 | MapMan:15.5.15 | : | : |
Description
C2H2L domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400015611]
Coordinates
chr5:+:6995422..6996475
Molecular Weight (calculated)
28223.5 Da
IEP (calculated)
8.448
GRAVY (calculated)
-1.005
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKDVVSSIF QSPSSNINGE NYHESSSKSC IENNNNNNNK KLKIFGFELI DDPKKSPNIV QNNSSKEDQE SVNSSSASTV SSGNIHHQEK ILSNHEEIMK
101: KFECQYCLKQ FANSQALGGH QNAHKKERMR KKRLQLQARK ASLSCYLQPF HNQNYNNNNI INYQFYDPQF NVYEESQISF NPNYDYQVSS SEGGAKWPFH
201: QDSNNYTFTL THGGNNYMKP PSTILDNSSS TKQKSTCKPL DLQLGLSL
101: KFECQYCLKQ FANSQALGGH QNAHKKERMR KKRLQLQARK ASLSCYLQPF HNQNYNNNNI INYQFYDPQF NVYEESQISF NPNYDYQVSS SEGGAKWPFH
201: QDSNNYTFTL THGGNNYMKP PSTILDNSSS TKQKSTCKPL DLQLGLSL
001: MSINPTMSRT GESSSGSSSD KTIKLFGFEL ISGSRTPEIT TAESVSSSTN TTSLTVMKRH ECQYCGKEFA NSQALGGHQN AHKKERLKKK RLQLQARRAS
101: IGYYLTNHQQ PITTSFQRQY KTPSYCAFSS MHVNNDQMGV YNEDWSSRSS QINFGNNDTC QDLNEQSGEM GKLYGVRPNM IQFQRDLSSR SDQMRSINSL
201: DLHLGFAGDA A
101: IGYYLTNHQQ PITTSFQRQY KTPSYCAFSS MHVNNDQMGV YNEDWSSRSS QINFGNNDTC QDLNEQSGEM GKLYGVRPNM IQFQRDLSSR SDQMRSINSL
201: DLHLGFAGDA A
Arabidopsis Description
ZFP5Zinc finger protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q39264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.