Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01779 | Canola | nucleus | 80.71 | 81.12 |
| Bra004200.1-P | Field mustard | nucleus | 77.16 | 79.58 |
| CDX96114 | Canola | nucleus | 77.16 | 79.58 |
| VIT_14s0006g02730.t01 | Wine grape | cytosol, mitochondrion, nucleus | 45.69 | 42.86 |
| PGSC0003DMT400037771 | Potato | nucleus | 42.64 | 39.62 |
| Solyc05g009170.1.1 | Tomato | nucleus | 42.64 | 39.62 |
| PGSC0003DMT400037720 | Potato | nucleus | 42.64 | 39.07 |
| Solyc05g009180.1.1 | Tomato | nucleus | 42.64 | 39.07 |
| AT1G68360.1 | Thale cress | nucleus | 43.15 | 34.84 |
| AT1G10480.1 | Thale cress | nucleus | 22.84 | 21.33 |
| AT2G41940.1 | Thale cress | nucleus | 21.83 | 16.73 |
| AT3G58070.1 | Thale cress | nucleus | 21.32 | 16.6 |
| AT5G06650.1 | Thale cress | nucleus | 15.74 | 16.23 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:843022 | ProteinID:AAF98212.1 | ProteinID:AEE34586.1 | ArrayExpress:AT1G67030 |
| EnsemblPlantsGene:AT1G67030 | RefSeq:AT1G67030 | TAIR:AT1G67030 | RefSeq:AT1G67030-TAIR-G | EnsemblPlants:AT1G67030.1 | TAIR:AT1G67030.1 |
| EMBL:AY050387 | EMBL:AY093800 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009736 | GO:GO:0009738 | GO:GO:0009740 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0010026 |
| GO:GO:0022626 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0046872 | InterPro:IPR013087 |
| EMBL:L39649 | RefSeq:NP_176873.1 | PO:PO:0000230 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF243 | UniProt:Q39265 | SUPFAM:SSF57667 | UniParc:UPI000013C3B7 |
| Symbol:ZFP6 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
ZFP6Zinc finger protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q39265]
Coordinates
chr1:+:25016402..25017512
Molecular Weight (calculated)
21415.4 Da
IEP (calculated)
9.188
GRAVY (calculated)
-0.641
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MATETSSLKL FGINLLETTS VQNQSSEPRP GSGSGSESRK YECQYCCREF ANSQALGGHQ NAHKKERQLL KRAQMLATRG LPRHHNFHPH TNPLLSAFAP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.