Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71975 | Canola | nucleus | 69.96 | 70.24 |
| Bra007378.1-P | Field mustard | nucleus | 68.77 | 68.77 |
| CDY06054 | Canola | nucleus | 68.77 | 68.77 |
| CDY56241 | Canola | nucleus | 58.89 | 66.52 |
| CDY57240 | Canola | nucleus | 62.06 | 65.69 |
| Bra003317.1-P | Field mustard | nucleus | 60.08 | 64.41 |
| AT2G41940.1 | Thale cress | nucleus | 48.62 | 47.86 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 18.58 | 43.12 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 40.32 | 42.86 |
| PGSC0003DMT400013992 | Potato | nucleus | 38.74 | 42.42 |
| Solyc03g058160.2.1 | Tomato | nucleus | 35.57 | 40.91 |
| KRG95435 | Soybean | nucleus | 39.13 | 38.82 |
| KRH67106 | Soybean | nucleus | 39.53 | 38.61 |
| AT5G06650.1 | Thale cress | nucleus | 28.46 | 37.7 |
| KRH38054 | Soybean | nucleus | 37.94 | 31.27 |
| GSMUA_Achr10P... | Banana | nucleus | 33.6 | 31.25 |
| Zm00001d018247_P001 | Maize | nucleus | 33.6 | 29.93 |
| Zm00001d044980_P001 | Maize | nucleus | 29.25 | 29.84 |
| Os02t0775600-01 | Rice | nucleus | 32.81 | 29.75 |
| OQU80598 | Sorghum | mitochondrion, nucleus, plastid | 20.16 | 29.48 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 33.2 | 29.47 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 32.81 | 29.23 |
| TraesCS6A01G335100.1 | Wheat | nucleus | 32.41 | 29.08 |
| Zm00001d037136_P001 | Maize | nucleus | 30.04 | 28.57 |
| OQU76029 | Sorghum | plastid | 32.81 | 28.33 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 32.02 | 28.32 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 30.04 | 27.54 |
| TraesCS7B01G071600.1 | Wheat | nucleus | 26.09 | 27.5 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 26.09 | 27.5 |
| TraesCS7A01G167000.1 | Wheat | nucleus | 26.09 | 27.39 |
| EES07621 | Sorghum | nucleus | 33.2 | 27.27 |
| Zm00001d052118_P001 | Maize | nucleus | 32.81 | 27.12 |
| AT1G67030.1 | Thale cress | nucleus | 16.6 | 21.32 |
| AT1G68360.1 | Thale cress | nucleus | 19.76 | 20.49 |
| AT1G10480.1 | Thale cress | nucleus | 15.41 | 18.48 |
| HORVU7Hr1G034940.1 | Barley | plastid | 8.3 | 16.8 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:824976 | UniProt:A0A178V7D1 | ProteinID:AEE79738.1 | ArrayExpress:AT3G58070 | EnsemblPlantsGene:AT3G58070 |
| RefSeq:AT3G58070 | TAIR:AT3G58070 | RefSeq:AT3G58070-TAIR-G | EnsemblPlants:AT3G58070.1 | TAIR:AT3G58070.1 | EMBL:BT003340 |
| EMBL:BT009676 | ProteinID:CAB67635.1 | Symbol:GIS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009739 |
| GO:GO:0009740 | GO:GO:0009987 | GO:GO:0010026 | GO:GO:0010091 | GO:GO:0016043 | GO:GO:0030154 |
| GO:GO:0046872 | InterPro:IPR013087 | RefSeq:NP_191366.1 | ProteinID:OAP02170.1 | PFAM:PF13912 | PO:PO:0000013 |
| PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000112 | PO:PO:0000229 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009047 | PO:PO:0020038 |
| PO:PO:0025022 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF316 | UniProt:Q84WI0 |
| SUPFAM:SSF57667 | UniParc:UPI000000BFC1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
Coordinates
chr3:-:21506572..21507739
Molecular Weight (calculated)
28458.3 Da
IEP (calculated)
7.714
GRAVY (calculated)
-1.062
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.