Factsheet for HORVU3Hr1G007060.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G044000.1	Wheat	nucleus	96.14	96.51
TraesCS3A01G036000.1	Wheat	nucleus	95.75	96.5
TraesCS3B01G048000.1	Wheat	nucleus	95.75	95.75
Os01t0132766-01	Rice	nucleus	72.59	70.41
Zm00001d039977_P001	Maize	nucleus	71.43	69.29
EES02547	Sorghum	nucleus	73.75	67.25
Zm00001d008562_P001	Maize	nucleus	68.73	66.17
GSMUA_Achr8P18340_001	Banana	nucleus	44.4	50.0
GSMUA_Achr3P21070_001	Banana	nucleus	44.4	49.36
GSMUA_Achr7P11950_001	Banana	nucleus	40.54	49.07
GSMUA_Achr2P07210_001	Banana	nucleus	45.95	48.97
GSMUA_Achr4P13760_001	Banana	nucleus	32.43	40.98
GSMUA_Achr9P21420_001	Banana	nucleus	35.14	39.57
GSMUA_Achr8P31650_001	Banana	nucleus	30.12	39.2
GSMUA_Achr4P06770_001	Banana	nucleus	32.05	39.15
GSMUA_Achr5P09990_001	Banana	cytosol, mitochondrion, nucleus	28.57	36.27
GSMUA_Achr11P...	Banana	nucleus	33.59	34.12
HORVU7Hr1G034930.2	Barley	nucleus	12.36	29.36
GSMUA_Achr2P14620_001	Banana	nucleus	24.32	28.77
HORVU6Hr1G080870.1	Barley	nucleus	22.39	20.42
HORVU5Hr1G066750.1	Barley	nucleus	23.55	20.33
HORVU7Hr1G034940.1	Barley	plastid	5.02	10.4

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:AK366609	EMBL:AK374770	UniProt:F2DRU1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU3Hr1G007060	EnsemblPlants:HORVU3Hr1G007060.1	InterPro:IPR013087	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF237	SUPFAM:SSF57667	UniParc:UPI0002007396	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DRU1]

Coordinates

chrchr3H:+:17175802..17177553

Molecular Weight (calculated)

26354.7 Da

IEP (calculated)

7.361

GRAVY (calculated)

-0.264

Length

259 amino acids

Sequence
(BLAST)

001: MSMASPRLKL FGFHFSSAEE NHTMDAAEHE AAEPEKGGSD SSSSSTTTTT TATAAAAAVG GGGEGRRYEC QYCCREFANS QALGGHQNAH KKERQQLKRA
101: QLQAAAAAAG RAAGGGALYP RGGGMNPMVS AFAQPPHLLG GAGDGGTGPT SWVYFSPRAA AVAGGAQGQQ FHVSHGCVFP SGRGTPASAS PAVFSYAPTV
201: SSAAQAAAAP YVVQADVVDH HGRRLHAASF PRYPGMVMAP EPMAAAPEDA LGLDLQLSL

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.