Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G236500.1 | Wheat | nucleus | 97.0 | 97.32 |
| TraesCS5B01G229800.1 | Wheat | nucleus | 97.67 | 96.38 |
| TraesCS5A01G231500.1 | Wheat | nucleus | 96.67 | 96.35 |
| Zm00001d020653_P001 | Maize | nucleus | 64.67 | 66.21 |
| Zm00001d005837_P001 | Maize | nucleus | 63.67 | 66.09 |
| OQU89585 | Sorghum | nucleus | 65.33 | 63.43 |
| Os09t0445500-01 | Rice | nucleus | 60.67 | 61.49 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 20.33 | 55.96 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 36.0 | 38.03 |
| HORVU7Hr1G034940.1 | Barley | plastid | 12.33 | 29.6 |
| HORVU3Hr1G007060.1 | Barley | nucleus | 20.33 | 23.55 |
Protein Annotations
| EMBL:AK355960 | EnsemblPlants:HORVU5Hr1G066750.1 | EnsemblPlantsGene:HORVU5Hr1G066750 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF238 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0002004C9D | UniProt:F2CWF7 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CWF7]
Coordinates
chrchr5H:-:509049226..509050856
Molecular Weight (calculated)
31092.9 Da
IEP (calculated)
8.498
GRAVY (calculated)
-0.526
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSEQDGQH ATNGLPGDAA NGAVDIDSFS QLPFVRPKPP PAMEAGGSSP TSSIRLFGFD FPPDGAASSV TDGDAAAVSS TAPGQATAAG SASAGASGGS
101: GGRKFECHYC CRNFPTSQAL GGHQNAHKRE RQHAKRAQFQ SAMAMQGHYP AHVYPAFGSG YHHRFVAGPP HMSRYEPPPH YPSWSNHHHL APTMPAAVPR
201: YYGSGPGSVS QPINGSPVPA SALWRVPGVS VATPAAPRQE RPTPLTLAGR DDMAVAWERR GQAGSASSAS SASSSSQHEA VRHGGEAAEK RANVSLDLTL
101: GGRKFECHYC CRNFPTSQAL GGHQNAHKRE RQHAKRAQFQ SAMAMQGHYP AHVYPAFGSG YHHRFVAGPP HMSRYEPPPH YPSWSNHHHL APTMPAAVPR
201: YYGSGPGSVS QPINGSPVPA SALWRVPGVS VATPAAPRQE RPTPLTLAGR DDMAVAWERR GQAGSASSAS SASSSSQHEA VRHGGEAAEK RANVSLDLTL
001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
Arabidopsis Description
ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.