CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020653_P001	Maize	nucleus	82.52	87.03
Zm00001d005837_P001	Maize	nucleus	76.7	82.01
TraesCS5D01G236500.1	Wheat	nucleus	63.75	65.89
HORVU5Hr1G066750.1	Barley	nucleus	63.43	65.33
TraesCS5A01G231500.1	Wheat	nucleus	63.43	65.12
Os09t0445500-01	Rice	nucleus	62.14	64.86
TraesCS5B01G229800.1	Wheat	nucleus	63.75	64.8
EES13973	Sorghum	nucleus	50.49	48.0
EES07621	Sorghum	nucleus	39.16	39.29
OQU80598	Sorghum	mitochondrion, nucleus, plastid	21.68	38.73
EER92638	Sorghum	nucleus	33.01	34.34
OQU76029	Sorghum	plastid	30.42	32.08
EER89601	Sorghum	cytosol, nucleus, plastid	17.8	26.44
EES02547	Sorghum	nucleus	19.74	21.48

Protein Annotations

EnsemblPlants:OQU89585	EnsemblPlantsGene:SORBI_3002G219300	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF238	PFscan:PS50157
ProteinID:OQU89585	ProteinID:OQU89585.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI0003C68AB4
UniProt:A0A1W0W5I0	MapMan:15.5.15	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:61089015..61091774

Molecular Weight (calculated)

31644.5 Da

IEP (calculated)

9.856

GRAVY (calculated)

-0.510

Length

309 amino acids

Sequence
(BLAST)

001: MSEQGGQHVG GTSPSDTAIE SFSQLPFVRP KPPQPPASSS SPSSIRLFGF EVPPDAVTSS SATSDATAAS SATAAGGQVV VSGAGAGAGD GSGSGGAGRK
101: FECHYCCRNF PTSQALGGHQ NAHKRERQHA KRAQYQSAMA MHHAHYPAGY HPHAYPAFTA SYHHRFGMAR YEPPPGPPPH YPSWSSHHPT QAAAPPPVVV
201: PRYYGGAAGS LSQPINGSPV PAAALWRVPA VTVAAAAPLV RQERPAPLSL GGGRGEDAMA GARKGNVAAG HGGSRSSSSS STSSQHERRR AGAAAAAENR
301: ENVSLDLTL

Best Arabidopsis Sequence Match ( AT2G41940.1 )
(BLAST)

001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL

Arabidopsis Description

ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.