CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045738_P001	Maize	nucleus	85.58	79.82
TraesCS3D01G365900.1	Wheat	nucleus	52.88	55.56
TraesCS3B01G405300.1	Wheat	nucleus	51.92	55.1
Os01t0512700-00	Rice	cytosol, nucleus, plastid	56.73	48.76
TraesCS3A01G373000.1	Wheat	nucleus	51.92	44.08
EES02547	Sorghum	nucleus	34.62	25.35
OQU80598	Sorghum	mitochondrion, nucleus, plastid	20.19	24.28
OQU76029	Sorghum	plastid	26.44	18.77
EER92638	Sorghum	nucleus	26.44	18.52
OQU89585	Sorghum	nucleus	26.44	17.8
EES13973	Sorghum	nucleus	27.4	17.54
EES07621	Sorghum	nucleus	24.52	16.56

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8073724	UniProt:C5Z8J9	EnsemblPlants:EER89601	ProteinID:EER89601
ProteinID:EER89601.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374
PANTHER:PTHR26374:SF307	EnsemblPlantsGene:SORBI_3010G116000	SUPFAM:SSF57667	UniParc:UPI0001A89A6C	RefSeq:XP_002438234.1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:12388806..12391207

Molecular Weight (calculated)

21835.0 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.157

Length

208 amino acids

Sequence
(BLAST)

001: MAAADIKCEQ PKRTPSASSL RIFGYDVAGE GIIADHIVVA QPPPQDDGRP VVVVDRRRFE CQYCCREFAN SQALGGHQNA HKKERQQLKR ERQFAARVLD
101: GGAAAAAGLG GICVAGFTSS RPPPGHVIAV SPGAVASWVY LAHQPAAATM AMGLPFHAGV CQPEPLMLRG GTGGRSYEMC ALADDDTEEP SSAMGLDLHL
201: SLAPASSS

Best Arabidopsis Sequence Match ( AT1G67030.1 )
(BLAST)

001: MATETSSLKL FGINLLETTS VQNQSSEPRP GSGSGSESRK YECQYCCREF ANSQALGGHQ NAHKKERQLL KRAQMLATRG LPRHHNFHPH TNPLLSAFAP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP

Arabidopsis Description

ZFP6Zinc finger protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q39265]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.