Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G405300.1 | Wheat | nucleus | 94.95 | 95.92 |
| TraesCS3A01G373000.1 | Wheat | nucleus | 97.47 | 78.78 |
| EER89601 | Sorghum | cytosol, nucleus, plastid | 55.56 | 52.88 |
| Zm00001d045738_P001 | Maize | nucleus | 56.06 | 49.78 |
| Os01t0512700-00 | Rice | cytosol, nucleus, plastid | 59.09 | 48.35 |
| TraesCS3D01G044000.1 | Wheat | nucleus | 30.3 | 23.26 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 21.72 | 17.92 |
| TraesCS5D01G236500.1 | Wheat | nucleus | 26.77 | 17.73 |
| TraesCS4D01G244500.1 | Wheat | nucleus | 24.75 | 17.38 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 24.75 | 17.19 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G365900.1 | EnsemblPlantsGene:TraesCS3D01G365900 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF307 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr3D:+:480149232..480149828
Molecular Weight (calculated)
20793.4 Da
IEP (calculated)
7.870
GRAVY (calculated)
-0.365
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MADIRCDQPK MTPASPSSLR IFGYDVPGGA TDAAAAVLTP PPTPPADARR FGCQYCSREF ANSQALGGHQ NAHKKERQQL KRARLQVDAR MSYFAPPPGH
101: LIAVGHAGSS AYTRDAFHRW VYLAHQSAAG LPFHALPAGG GCHAEPRLLQ DPRDCGSAAI STSSGARACT PADDSTEEAS AMGVGLDLDL RLAPATSS
101: LIAVGHAGSS AYTRDAFHRW VYLAHQSAAG LPFHALPAGG GCHAEPRLLQ DPRDCGSAAI STSSGARACT PADDSTEEAS AMGVGLDLDL RLAPATSS
001: MATETSSLKL FGINLLETTS VQNQSSEPRP GSGSGSESRK YECQYCCREF ANSQALGGHQ NAHKKERQLL KRAQMLATRG LPRHHNFHPH TNPLLSAFAP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
Arabidopsis Description
ZFP6Zinc finger protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q39265]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.