Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G365900.1 | Wheat | nucleus | 48.35 | 59.09 |
| TraesCS3B01G405300.1 | Wheat | nucleus | 46.28 | 57.14 |
| EER89601 | Sorghum | cytosol, nucleus, plastid | 48.76 | 56.73 |
| Zm00001d045738_P001 | Maize | nucleus | 47.52 | 51.57 |
| TraesCS3A01G373000.1 | Wheat | nucleus | 47.52 | 46.94 |
| Os01t0132766-01 | Rice | nucleus | 34.3 | 31.09 |
| Os02t0775600-01 | Rice | nucleus | 25.21 | 21.86 |
| Os08t0463500-01 | Rice | nucleus | 24.38 | 19.67 |
| Os09t0445500-01 | Rice | nucleus | 23.97 | 19.59 |
| Os03t0216000-01 | Rice | nucleus | 21.9 | 17.85 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | ProteinID:BAH91104.1 | ProteinID:BAS72392.1 | UniProt:C7IXY1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| InterPro:IPR013087 | EnsemblPlantsGene:Os01g0512700 | EnsemblPlants:Os01t0512700-00 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF307 | SUPFAM:SSF57667 | UniParc:UPI0000F0EB2D | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
Zinc finger, C2H2 domain containing protein. (Os01t0512700-00)
Coordinates
chr1:+:18073579..18074311
Molecular Weight (calculated)
23973.1 Da
IEP (calculated)
7.091
GRAVY (calculated)
0.029
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVVQTVQC DQPSKQQLTE AAEAAAAAAA AASLRIFGYE VGGGGGGGGV AAAAGARREA ADVVVGAGRR FECQYCCREF ANSQALGGHQ NAHKKERQQL
101: KRARLQLAVA AAGTPAGMGF AAAQAPAPPP GHVIAVGHHA GSVASYALPR WVYLAAHHLQ PPAVGLPFHA TVQAAAGACH GGGDVETRLL SVAAAGRGSS
201: TAGSSAHSYE VCAPAAPADD SDEEASAMGL DLHLSLAPAS SA
101: KRARLQLAVA AAGTPAGMGF AAAQAPAPPP GHVIAVGHHA GSVASYALPR WVYLAAHHLQ PPAVGLPFHA TVQAAAGACH GGGDVETRLL SVAAAGRGSS
201: TAGSSAHSYE VCAPAAPADD SDEEASAMGL DLHLSLAPAS SA
001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
Arabidopsis Description
GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.