CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039977_P001	Maize	nucleus	85.21	90.64
Zm00001d008562_P001	Maize	nucleus	81.34	85.87
Os01t0132766-01	Rice	nucleus	76.76	81.65
TraesCS3D01G044000.1	Wheat	nucleus	67.25	74.03
TraesCS3B01G048000.1	Wheat	nucleus	67.25	73.75
HORVU3Hr1G007060.1	Barley	nucleus	67.25	73.75
TraesCS3A01G036000.1	Wheat	nucleus	66.55	73.54
GSMUA_Achr7P11950_001	Banana	nucleus	39.08	51.87
GSMUA_Achr2P07210_001	Banana	nucleus	44.01	51.44
GSMUA_Achr3P21070_001	Banana	nucleus	41.9	51.07
GSMUA_Achr8P18340_001	Banana	nucleus	41.2	50.87
GSMUA_Achr4P13760_001	Banana	nucleus	33.45	46.34
GSMUA_Achr8P31650_001	Banana	nucleus	32.04	45.73
GSMUA_Achr4P06770_001	Banana	nucleus	32.04	42.92
GSMUA_Achr9P21420_001	Banana	nucleus	33.8	41.74
GSMUA_Achr5P09990_001	Banana	cytosol, mitochondrion, nucleus	28.17	39.22
GSMUA_Achr11P...	Banana	nucleus	32.04	35.69
EER89601	Sorghum	cytosol, nucleus, plastid	25.35	34.62
GSMUA_Achr2P14620_001	Banana	nucleus	26.06	33.79
OQU80598	Sorghum	mitochondrion, nucleus, plastid	15.14	24.86
OQU76029	Sorghum	plastid	21.13	20.48
OQU89585	Sorghum	nucleus	21.48	19.74
EES13973	Sorghum	nucleus	22.54	19.69
EES07621	Sorghum	nucleus	20.77	19.16
EER92638	Sorghum	nucleus	19.37	18.52

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8061361	UniProt:C5XQU3	EnsemblPlants:EES02547	ProteinID:EES02547
ProteinID:EES02547.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR013087	ProteinID:OQU86388.1	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR26374	PANTHER:PTHR26374:SF237	EnsemblPlantsGene:SORBI_3003G084400	SUPFAM:SSF57667	unigene:Sbi.10892	UniParc:UPI0001A84BCB
RefSeq:XP_002457427.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:7256726..7258701

Molecular Weight (calculated)

28569.2 Da

IEP (calculated)

6.734

GRAVY (calculated)

-0.219

Length

284 amino acids

Sequence
(BLAST)

001: MNMTSPRLKL FGFHVSEEER HHELPGLETE AAEAEPDQEA PACGNNGGGG GSDSSSSSTT TTTTATGAAT AGAGAGDGRR YECQYCCREF ANSQALGGHQ
101: NAHKKERQQL KRAQLQAAAA AAGRVAGGAA ALYPRANPMV SAFVPPPHLL GGGGVGDAAP TSWVYFSPRA AAVAGGPQGQ QFHVSHNCVF PSSRASPAAV
201: TASPAVFSYT TAPASAAGAA SAPYVMTDDH SGRRVHHVSP AAALGRYPGM AAGPGMAVVA EPVVTGPEDA LGLDLQLSLA PAGL

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.