Factsheet for Zm00001d039977_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02547	Sorghum	nucleus	90.64	85.21
Zm00001d008562_P001	Maize	nucleus	83.9	83.27
Os01t0132766-01	Rice	nucleus	81.27	81.27
HORVU3Hr1G007060.1	Barley	nucleus	69.29	71.43
TraesCS3D01G044000.1	Wheat	nucleus	68.54	70.93
TraesCS3B01G048000.1	Wheat	nucleus	68.54	70.66
TraesCS3A01G036000.1	Wheat	nucleus	67.79	70.43
GSMUA_Achr3P21070_001	Banana	nucleus	44.19	50.64
GSMUA_Achr7P11950_001	Banana	nucleus	40.45	50.47
GSMUA_Achr2P07210_001	Banana	nucleus	45.69	50.21
GSMUA_Achr8P18340_001	Banana	nucleus	43.07	50.0
GSMUA_Achr8P31650_001	Banana	nucleus	34.08	45.73
GSMUA_Achr4P13760_001	Banana	nucleus	34.08	44.39
GSMUA_Achr4P06770_001	Banana	nucleus	34.08	42.92
GSMUA_Achr9P21420_001	Banana	nucleus	36.33	42.17
GSMUA_Achr5P09990_001	Banana	cytosol, mitochondrion, nucleus	28.46	37.25
GSMUA_Achr11P...	Banana	nucleus	32.58	34.12
GSMUA_Achr2P14620_001	Banana	nucleus	26.59	32.42
Zm00001d045738_P001	Maize	nucleus	26.22	31.39
Zm00001d044980_P001	Maize	nucleus	19.1	20.56
Zm00001d037136_P001	Maize	nucleus	20.22	20.3
Zm00001d020653_P001	Maize	nucleus	22.1	20.14
Zm00001d005837_P001	Maize	nucleus	21.72	20.07
Zm00001d050111_P001	Maize	nucleus	22.85	19.43
Zm00001d018247_P001	Maize	nucleus	20.22	19.01
Zm00001d052118_P001	Maize	nucleus	20.97	18.3
Zm00001d028222_P001	Maize	nucleus	19.85	16.61

Protein Annotations

EnsemblPlants:Zm00001d039977_P001	EnsemblPlants:Zm00001d039977_T001	EnsemblPlantsGene:Zm00001d039977	EntrezGene:103649832	Gene3D:3.30.160.60	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374
PANTHER:PTHR26374:SF237	PFscan:PS50157	ProteinID:ONM30252.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667
UniParc:UPI0002213988	UniProt:A0A1D6MM14	MapMan:15.5.15	:	:	:

Description

Zinc finger protein 6

Coordinates

chr3:-:21462332..21463135

Molecular Weight (calculated)

27207.6 Da

IEP (calculated)

6.844

GRAVY (calculated)

-0.274

Length

267 amino acids

Sequence
(BLAST)

001: MNMASPRLKL FGFHVSKEEH ELCPETTTEA ETTEPEEAPA CGNNGGGSDS SSSSTTTTTT ATAAGGDGRR YECQYCCREF ANSQALGGHQ NAHKKERQQL
101: KRAQLQAAAA AAGRVAGGAA AALYPRANPM VSAFVPPPHL LGGGGDASPT SWVYFSPRAA AVAGGPQGQQ FHVSHNCVFP SRATPAAAVT AASPAVFSYT
201: PAPSAASAPY VTDDHHSGRR VVHVSPAAAL GRYPGMAAGP GMAEPVVTGP EDALGLDLQL SLAPAGL

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.