Factsheet for Zm00001d008562_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039977_P001	Maize	nucleus	83.27	83.9
EES02547	Sorghum	nucleus	85.87	81.34
Os01t0132766-01	Rice	nucleus	76.58	77.15
HORVU3Hr1G007060.1	Barley	nucleus	66.17	68.73
TraesCS3D01G044000.1	Wheat	nucleus	65.43	68.22
TraesCS3B01G048000.1	Wheat	nucleus	65.43	67.95
TraesCS3A01G036000.1	Wheat	nucleus	64.68	67.7
GSMUA_Achr7P11950_001	Banana	nucleus	40.15	50.47
GSMUA_Achr2P07210_001	Banana	nucleus	45.35	50.21
GSMUA_Achr8P18340_001	Banana	nucleus	42.01	49.13
GSMUA_Achr3P21070_001	Banana	nucleus	42.38	48.93
GSMUA_Achr8P31650_001	Banana	nucleus	32.71	44.22
GSMUA_Achr4P13760_001	Banana	nucleus	33.46	43.9
GSMUA_Achr9P21420_001	Banana	nucleus	35.32	41.3
GSMUA_Achr4P06770_001	Banana	nucleus	32.34	41.04
GSMUA_Achr5P09990_001	Banana	cytosol, mitochondrion, nucleus	28.25	37.25
GSMUA_Achr11P...	Banana	nucleus	32.71	34.51
GSMUA_Achr2P14620_001	Banana	nucleus	26.77	32.88
Zm00001d045738_P001	Maize	nucleus	26.39	31.84
Zm00001d044980_P001	Maize	nucleus	20.45	22.18
Zm00001d037136_P001	Maize	nucleus	20.45	20.68
Zm00001d020653_P001	Maize	nucleus	21.93	20.14
Zm00001d005837_P001	Maize	nucleus	21.56	20.07
Zm00001d050111_P001	Maize	nucleus	22.68	19.43
Zm00001d018247_P001	Maize	nucleus	20.45	19.37
Zm00001d052118_P001	Maize	nucleus	21.19	18.63
Zm00001d028222_P001	Maize	nucleus	20.07	16.93

Protein Annotations

EnsemblPlants:Zm00001d008562_P001	EnsemblPlants:Zm00001d008562_T001	EnsemblPlantsGene:Zm00001d008562	EntrezGene:103634799	Gene3D:3.30.160.60	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374
PANTHER:PTHR26374:SF237	PFscan:PS50157	ProteinID:AQK90166.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667
UniParc:UPI0002219EAA	UniProt:K7UYD1	MapMan:15.5.15	:	:	:

Description

Zinc finger protein 6

Coordinates

chr8:+:13032315..13033124

Molecular Weight (calculated)

27306.7 Da

IEP (calculated)

6.940

GRAVY (calculated)

-0.217

Length

269 amino acids

Sequence
(BLAST)

001: MNMTSPRLKL FGFHVSEEEH ELGRARETEA EAEPDEAPAC GNVGGGGGGS DSSSSSTTTT TTTTATAAGD ARRFECQYCC REFANSQALG GHQNAHKKER
101: QQLKRAQLQA AAAAAGRVAA GGALYPRANP MVSAFVPPPH LFGGGGDAAP TSWVYFSPRA AAAGGQQFHV SHNCVFPSRA ATPATVTAAS PAVFSYASAS
201: SAGGGASAAY VTDDQYSGRR VHVSPAAALR RYPGMAAGPG MAVVAEPVVA GPEDALGLDL QLSLAPAGL

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.