Factsheet for GSMUA_Achr3P21070_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P18340_001	Banana	nucleus	65.67	66.52
GSMUA_Achr2P07210_001	Banana	nucleus	52.79	50.62
GSMUA_Achr7P11950_001	Banana	nucleus	45.92	50.0
TraesCS3D01G044000.1	Wheat	nucleus	49.79	44.96
TraesCS3B01G048000.1	Wheat	nucleus	49.79	44.79
TraesCS3A01G036000.1	Wheat	nucleus	49.36	44.75
HORVU3Hr1G007060.1	Barley	nucleus	49.36	44.4
Zm00001d039977_P001	Maize	nucleus	50.64	44.19
Os01t0132766-01	Rice	nucleus	49.79	43.45
Zm00001d008562_P001	Maize	nucleus	48.93	42.38
EES02547	Sorghum	nucleus	51.07	41.9
GSMUA_Achr4P13760_001	Banana	nucleus	36.48	41.46
GSMUA_Achr8P31650_001	Banana	nucleus	34.76	40.7
GSMUA_Achr4P06770_001	Banana	nucleus	36.91	40.57
GSMUA_Achr9P21420_001	Banana	nucleus	39.06	39.57
GSMUA_Achr11P...	Banana	nucleus	40.34	36.86
GSMUA_Achr5P09990_001	Banana	cytosol, mitochondrion, nucleus	30.47	34.8
GSMUA_Achr2P14620_001	Banana	nucleus	30.04	31.96
GSMUA_AchrUn_...	Banana	cytosol	19.74	22.55
GSMUA_Achr1P22000_001	Banana	nucleus	22.32	20.0
GSMUA_Achr10P...	Banana	nucleus	23.18	19.85
GSMUA_Achr8P22740_001	Banana	nucleus	21.03	19.29
GSMUA_Achr3P07800_001	Banana	nucleus	18.03	19.09
GSMUA_Achr3P02080_001	Banana	nucleus	22.32	18.84

Protein Annotations

EnsemblPlants:GSMUA_Achr3P21070_001	EnsemblPlants:GSMUA_Achr3T21070_001	EnsemblPlantsGene:GSMUA_Achr3G21070_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF237
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI000295F12F	UniProt:M0SGH3
MapMan:15.5.15	:	:	:	:	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G21070_001]

Coordinates

chr3:-:22098401..22099102

Molecular Weight (calculated)

24024.9 Da

IEP (calculated)

7.929

GRAVY (calculated)

-0.499

Length

233 amino acids

Sequence
(BLAST)

001: MSEIDYCRSK NSGSLRLKLF GFEMSEGEEA GLGSDSSSST ITTASGGGGG GGGGGDGKKY ECQFCCREFA NSQALGGHQN AHKKERQQSK RAQMQQQLHH
101: GGVGFGGLLY PRSPMVSAFT TPPRFLPAGS ASPISGHPDW VYFSRTAAPQ PSPFHVSHGC AFPAPSATNR KVPPGPGIVS YAAAGYIDGG GMQVHDEGRA
201: AAGPISFPNK DDSAGKDDSA GLDLKLTLAT AGS

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.