Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P06770_001 | Banana | nucleus | 75.12 | 72.64 |
| GSMUA_Achr9P21420_001 | Banana | nucleus | 73.17 | 65.22 |
| GSMUA_Achr5P09990_001 | Banana | cytosol, mitochondrion, nucleus | 40.49 | 40.69 |
| GSMUA_Achr8P31650_001 | Banana | nucleus | 38.05 | 39.2 |
| GSMUA_Achr8P18340_001 | Banana | nucleus | 43.9 | 39.13 |
| GSMUA_Achr7P11950_001 | Banana | nucleus | 38.54 | 36.92 |
| GSMUA_Achr3P21070_001 | Banana | nucleus | 41.46 | 36.48 |
| GSMUA_Achr2P07210_001 | Banana | nucleus | 42.44 | 35.8 |
| Zm00001d039977_P001 | Maize | nucleus | 44.39 | 34.08 |
| Zm00001d008562_P001 | Maize | nucleus | 43.9 | 33.46 |
| EES02547 | Sorghum | nucleus | 46.34 | 33.45 |
| Os01t0132766-01 | Rice | nucleus | 43.41 | 33.33 |
| TraesCS3A01G036000.1 | Wheat | nucleus | 40.98 | 32.68 |
| TraesCS3D01G044000.1 | Wheat | nucleus | 40.98 | 32.56 |
| HORVU3Hr1G007060.1 | Barley | nucleus | 40.98 | 32.43 |
| TraesCS3B01G048000.1 | Wheat | nucleus | 40.98 | 32.43 |
| GSMUA_Achr11P... | Banana | nucleus | 38.05 | 30.59 |
| GSMUA_Achr2P14620_001 | Banana | nucleus | 31.22 | 29.22 |
| GSMUA_Achr1P22000_001 | Banana | nucleus | 26.83 | 21.15 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.98 | 21.08 |
| GSMUA_Achr8P22740_001 | Banana | nucleus | 25.85 | 20.87 |
| GSMUA_Achr3P07800_001 | Banana | nucleus | 20.0 | 18.64 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 22.44 | 16.67 |
| GSMUA_Achr10P... | Banana | nucleus | 20.98 | 15.81 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P13760_001 | EnsemblPlants:GSMUA_Achr4T13760_001 | EnsemblPlantsGene:GSMUA_Achr4G13760_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF237 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000294E8FF | UniProt:M0SNP1 | MapMan:15.5.15 |
Description
Putative Zinc finger protein 6 [Source:GMGC_GENE;Acc:GSMUA_Achr4G13760_001]
Coordinates
chr4:+:10300525..10301214
Molecular Weight (calculated)
21272.6 Da
IEP (calculated)
7.167
GRAVY (calculated)
-0.497
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMAGIQCQA KASTSPRLKL FGFHVCDNDN TADGSGDVAA VESPSSGSGG VAGNGDGRKY ECQYCCREFA NSQALGGHQN AHKKERQQLK RAQLHHHHHY
101: LAASGHRSLP GNFYHQPVAS AFAPPPHLLS LPRPPPTATT PVVGSQATAA GSLVYYARSA PPTHLCYDDG KSAGGPGFSG AAPADDGAED SYGLDLHLSL
201: APAGS
101: LAASGHRSLP GNFYHQPVAS AFAPPPHLLS LPRPPPTATT PVVGSQATAA GSLVYYARSA PPTHLCYDDG KSAGGPGFSG AAPADDGAED SYGLDLHLSL
201: APAGS
001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
Arabidopsis Description
GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.