Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P13760_001 | Banana | nucleus | 72.64 | 75.12 |
| GSMUA_Achr9P21420_001 | Banana | nucleus | 65.57 | 60.43 |
| GSMUA_Achr8P18340_001 | Banana | nucleus | 42.45 | 39.13 |
| GSMUA_Achr7P11950_001 | Banana | nucleus | 38.68 | 38.32 |
| GSMUA_Achr3P21070_001 | Banana | nucleus | 40.57 | 36.91 |
| GSMUA_Achr5P09990_001 | Banana | cytosol, mitochondrion, nucleus | 35.38 | 36.76 |
| GSMUA_Achr2P07210_001 | Banana | nucleus | 41.04 | 35.8 |
| GSMUA_Achr8P31650_001 | Banana | nucleus | 32.55 | 34.67 |
| Zm00001d039977_P001 | Maize | nucleus | 42.92 | 34.08 |
| Os01t0132766-01 | Rice | nucleus | 41.04 | 32.58 |
| Zm00001d008562_P001 | Maize | nucleus | 41.04 | 32.34 |
| TraesCS3A01G036000.1 | Wheat | nucleus | 39.15 | 32.3 |
| TraesCS3D01G044000.1 | Wheat | nucleus | 39.15 | 32.17 |
| HORVU3Hr1G007060.1 | Barley | nucleus | 39.15 | 32.05 |
| TraesCS3B01G048000.1 | Wheat | nucleus | 39.15 | 32.05 |
| EES02547 | Sorghum | nucleus | 42.92 | 32.04 |
| GSMUA_Achr11P... | Banana | nucleus | 37.74 | 31.37 |
| GSMUA_Achr2P14620_001 | Banana | nucleus | 29.25 | 28.31 |
| GSMUA_AchrUn_... | Banana | cytosol | 21.23 | 22.06 |
| GSMUA_Achr8P22740_001 | Banana | nucleus | 25.0 | 20.87 |
| GSMUA_Achr3P07800_001 | Banana | nucleus | 21.23 | 20.45 |
| GSMUA_Achr1P22000_001 | Banana | nucleus | 25.0 | 20.38 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 23.11 | 17.75 |
| GSMUA_Achr10P... | Banana | nucleus | 22.17 | 17.28 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P06770_001 | EnsemblPlants:GSMUA_Achr4T06770_001 | EnsemblPlantsGene:GSMUA_Achr4G06770_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF237 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000295A005 | UniProt:M0SLP4 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Putative Zinc finger protein 6 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06770_001]
Coordinates
chr4:+:5071585..5072289
Molecular Weight (calculated)
22117.7 Da
IEP (calculated)
7.394
GRAVY (calculated)
-0.450
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMAGVGCQT KATSSPGLKL FGFQVSDSDN ATNGSGDVAA ADSSSSASGS VAGGGDVRKY ECQYCCREFA NSQALGGHQN AHKKERQQMK RAQVHHHHPH
101: MASPHRSPAG NFYHQPIASA FSLPPPHLLS PVHRPPSPAT TATMTTVVGL QATAAGSWVY YARAAPPLPL ELFYDDGRPT SGPTLQGAAP ADGGAEDSYG
201: LDLHLSLAPA RS
101: MASPHRSPAG NFYHQPIASA FSLPPPHLLS PVHRPPSPAT TATMTTVVGL QATAAGSWVY YARAAPPLPL ELFYDDGRPT SGPTLQGAAP ADGGAEDSYG
201: LDLHLSLAPA RS
001: MATETSSLKL FGINLLETTS VQNQSSEPRP GSGSGSESRK YECQYCCREF ANSQALGGHQ NAHKKERQLL KRAQMLATRG LPRHHNFHPH TNPLLSAFAP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
Arabidopsis Description
ZFP6Zinc finger protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q39265]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.