Factsheet for GSMUA_Achr8P31650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P13760_001	Banana	nucleus	39.2	38.05
GSMUA_Achr9P21420_001	Banana	nucleus	41.71	36.09
GSMUA_Achr8P18340_001	Banana	nucleus	40.2	34.78
GSMUA_Achr3P21070_001	Banana	nucleus	40.7	34.76
Os01t0132766-01	Rice	nucleus	46.23	34.46
GSMUA_Achr5P09990_001	Banana	cytosol, mitochondrion, nucleus	35.18	34.31
Zm00001d039977_P001	Maize	nucleus	45.73	34.08
GSMUA_Achr2P07210_001	Banana	nucleus	41.21	33.74
GSMUA_Achr7P11950_001	Banana	nucleus	36.18	33.64
Zm00001d008562_P001	Maize	nucleus	44.22	32.71
GSMUA_Achr4P06770_001	Banana	nucleus	34.67	32.55
EES02547	Sorghum	nucleus	45.73	32.04
TraesCS3A01G036000.1	Wheat	nucleus	39.7	30.74
TraesCS3D01G044000.1	Wheat	nucleus	39.2	30.23
HORVU3Hr1G007060.1	Barley	nucleus	39.2	30.12
TraesCS3B01G048000.1	Wheat	nucleus	39.2	30.12
GSMUA_Achr11P...	Banana	nucleus	34.17	26.67
GSMUA_Achr2P14620_001	Banana	nucleus	29.15	26.48
GSMUA_AchrUn_...	Banana	cytosol	21.11	20.59
GSMUA_Achr8P22740_001	Banana	nucleus	24.12	18.9
GSMUA_Achr3P07800_001	Banana	nucleus	19.6	17.73
GSMUA_Achr1P22000_001	Banana	nucleus	21.11	16.15
GSMUA_Achr3P02080_001	Banana	nucleus	22.11	15.94
GSMUA_Achr10P...	Banana	nucleus	21.11	15.44

Protein Annotations

EnsemblPlants:GSMUA_Achr8P31650_001	EnsemblPlants:GSMUA_Achr8T31650_001	EnsemblPlantsGene:GSMUA_Achr8G31650_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF237
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI000295CDE3	UniProt:M0TVB7
MapMan:15.5.15	:	:	:	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G31650_001]

Coordinates

chr8:-:33235558..33236157

Molecular Weight (calculated)

20828.3 Da

IEP (calculated)

7.611

GRAVY (calculated)

-0.482

Length

199 amino acids

Sequence
(BLAST)

001: MAGICEAAKA TGGSPRLKLF GFHMSHKEEP AGGGAPPVVS EAASSSTTVA SCAAWDGRKY ECQYCCREFA NSQALGGHQN AHREERQRQK RAQLQARAAH
101: HQRSPRAISS VAQPAIYAGF SRPNPPHDVL HHCAAPGWTY VAEGSLTVSP APRGLDGGPE GSRDVDLHLS PALAPRGLDG GPEGSSDLDL HLSLAPAGL

Best Arabidopsis Sequence Match ( AT1G10480.1 )
(BLAST)

001: MSINPTMSRT GESSSGSSSD KTIKLFGFEL ISGSRTPEIT TAESVSSSTN TTSLTVMKRH ECQYCGKEFA NSQALGGHQN AHKKERLKKK RLQLQARRAS
101: IGYYLTNHQQ PITTSFQRQY KTPSYCAFSS MHVNNDQMGV YNEDWSSRSS QINFGNNDTC QDLNEQSGEM GKLYGVRPNM IQFQRDLSSR SDQMRSINSL
201: DLHLGFAGDA A

Arabidopsis Description

ZFP5Zinc finger protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q39264]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.