Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g065490.2.1 | |
| Solyc10g006000.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47980.1 | Solyc07g065490.2.1 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | Solyc10g006000.2.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041086 | Potato | nucleus | 16.88 | 92.42 |
| VIT_07s0104g01070.t01 | Wine grape | nucleus | 64.16 | 64.77 |
| CDY70560 | Canola | cytosol | 33.51 | 64.18 |
| KRH68087 | Soybean | nucleus | 59.05 | 60.57 |
| GSMUA_Achr7P03650_001 | Banana | nucleus, plastid | 57.06 | 59.69 |
| CDX80145 | Canola | cytosol, nucleus, plastid | 50.39 | 59.57 |
| AT2G47980.1 | Thale cress | nucleus | 56.19 | 59.11 |
| Zm00001d007679_P001 | Maize | cytosol | 27.71 | 57.97 |
| Os05t0188500-02 | Rice | nucleus | 53.59 | 55.47 |
| HORVU4Hr1G031480.1 | Barley | nucleus | 52.12 | 53.7 |
| TraesCS4A01G158700.1 | Wheat | nucleus | 51.95 | 53.43 |
| TraesCSU01G181400.2 | Wheat | nucleus | 51.77 | 53.35 |
| OQU83929 | Sorghum | nucleus | 52.38 | 53.16 |
| TraesCS4D01G147700.3 | Wheat | nucleus | 51.86 | 52.64 |
| Zm00001d007677_P001 | Maize | cytosol | 25.19 | 46.26 |
| CDY71521 | Canola | cytosol, nucleus, plasma membrane | 8.74 | 42.08 |
| Bra004420.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 54.98 | 41.69 |
| CDY72413 | Canola | cytosol, nucleus, plasma membrane | 8.74 | 39.15 |
Protein Annotations
| EnsemblPlants:Solyc05g026510.2.1 | EnsemblPlantsGene:Solyc05g026510.2 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | InterPro:IPR020839 |
| InterPro:SCD | InterPro:STAG | ncoils:Coil | PANTHER:PTHR11199 | PANTHER:PTHR11199:SF0 | PFAM:PF08514 |
| PFscan:PS51425 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0002765EFA | UniProt:K4C032 | MapMan:13.3.5.1.5 |
Description
Sister-chromatid cohesion protein 3 [Source:Projected from Arabidopsis thaliana (AT2G47980) UniProtKB/Swiss-Prot;Acc:O82265]
Coordinates
chr5:-:41681314..41700135
Molecular Weight (calculated)
131343.0 Da
IEP (calculated)
5.458
GRAVY (calculated)
-0.355
Length
1155 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEEPVVSET ANRRTKRTRA QTRINEEQLH SSVNEEEREE SSEDFEDFRA RPKRSKALGG TSSAAAARNA HQSLIDVVKG DRRRIPLVVK HWVEHYEKDP
0101: KAAMAGLLSM MFEACGAKYH IEEDFLDQTD VDDVVVALVN MAKRGEVEDY QTSKKKDFKN FKDNLVYFWD TLVAECENGP LFDRVLFDKC MDYVIALSCT
0201: PPRVYRQVAS LMGLQLVTSF IHIAKVLGSQ RETTQRQLNA EQKKKVDGPR VESLNKRLSM THEKITIIEE MMRKIFTGLF MHRYRDVEPD IRMACIQSLG
0301: VWILSYPSLF LQDLYLKYLG WTLNDKSDGV RKASVLALQN LYEVDDNVPS LGLFTERFYK RMIELADDVD ISVAVCAIGL VKQLIRHQRV PEEELSSLYD
0401: LLIDDPPEIR RAIGALVYDN LIAQRLNSSQ SSSGDNADSS EVHLNRLLRI LGEFSKDEML SMYVIDDIWE YMDAMKDWKR ILSMLLEEEL SAELSDADAT
0501: NLIRLLFASI RKAVGEKIVP ASDNKKQYYT KAQKDMFESS KRDITIAMMR NYPQLLRKFI SDKAKIPYLL EIIVHMNLEL YSLKRQDQNF KSAVLLMKEA
0601: FFKHGEKEAL RSCVKALNFC ATESRGELQD FALNKLKGIE DELIMKLKSA IKEVADGDDE YTMLVNLKRL YELQLSRQIS TESLYKDLAE TLKNFRSIDD
0701: EVIGFLLLNM HLHVCWCLHS IINSGTVLEQ SISSLISKRS ALFELLESFL TTNSPEGLRA SQLACRVCVI FSEQWCLFKK ATFASTEIEA LGYSPDEAIL
0801: QKFWKLCERQ LHISDEAEEE DSNREYIEET NRDAVIIAVG KLVAVDAVPK EYLAPEILSH LSMHGTSVSA VIKHLLTVLR NNGADVAWLF IEALKRVGLP
0901: VSGELFDEIG SPVHEASPFT LGQGKSHTQV CVCVYVCKQP TLTQASVTGS AAHERYLVAL FSDDDESARK TFHECEDLAS GLAKTFGNAA RNKHRSDLLN
1001: IVTGGIQYAF TDAPKHLSFL DGAVLHFISK LPPSDIMNIL KDVEKRTENV NTDEDPSGWR PYHIFVDTVH EKYAKGDVLQ DDKEGAGRRR GRPTKKQNIQ
1101: GKKLFDEHNS SEDEESISGS DQEADEEKQD DEEVPLIHSF KSSSKLRSLK ISRES
0101: KAAMAGLLSM MFEACGAKYH IEEDFLDQTD VDDVVVALVN MAKRGEVEDY QTSKKKDFKN FKDNLVYFWD TLVAECENGP LFDRVLFDKC MDYVIALSCT
0201: PPRVYRQVAS LMGLQLVTSF IHIAKVLGSQ RETTQRQLNA EQKKKVDGPR VESLNKRLSM THEKITIIEE MMRKIFTGLF MHRYRDVEPD IRMACIQSLG
0301: VWILSYPSLF LQDLYLKYLG WTLNDKSDGV RKASVLALQN LYEVDDNVPS LGLFTERFYK RMIELADDVD ISVAVCAIGL VKQLIRHQRV PEEELSSLYD
0401: LLIDDPPEIR RAIGALVYDN LIAQRLNSSQ SSSGDNADSS EVHLNRLLRI LGEFSKDEML SMYVIDDIWE YMDAMKDWKR ILSMLLEEEL SAELSDADAT
0501: NLIRLLFASI RKAVGEKIVP ASDNKKQYYT KAQKDMFESS KRDITIAMMR NYPQLLRKFI SDKAKIPYLL EIIVHMNLEL YSLKRQDQNF KSAVLLMKEA
0601: FFKHGEKEAL RSCVKALNFC ATESRGELQD FALNKLKGIE DELIMKLKSA IKEVADGDDE YTMLVNLKRL YELQLSRQIS TESLYKDLAE TLKNFRSIDD
0701: EVIGFLLLNM HLHVCWCLHS IINSGTVLEQ SISSLISKRS ALFELLESFL TTNSPEGLRA SQLACRVCVI FSEQWCLFKK ATFASTEIEA LGYSPDEAIL
0801: QKFWKLCERQ LHISDEAEEE DSNREYIEET NRDAVIIAVG KLVAVDAVPK EYLAPEILSH LSMHGTSVSA VIKHLLTVLR NNGADVAWLF IEALKRVGLP
0901: VSGELFDEIG SPVHEASPFT LGQGKSHTQV CVCVYVCKQP TLTQASVTGS AAHERYLVAL FSDDDESARK TFHECEDLAS GLAKTFGNAA RNKHRSDLLN
1001: IVTGGIQYAF TDAPKHLSFL DGAVLHFISK LPPSDIMNIL KDVEKRTENV NTDEDPSGWR PYHIFVDTVH EKYAKGDVLQ DDKEGAGRRR GRPTKKQNIQ
1101: GKKLFDEHNS SEDEESISGS DQEADEEKQD DEEVPLIHSF KSSSKLRSLK ISRES
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
Arabidopsis Description
SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.