Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010432.1-P | |
| Bra026415.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47980.1 | Bra010432.1-P | AT4G26630.1 | 25387881 |
| AT2G47980.1 | Bra026415.1-P | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72413 | Canola | cytosol, nucleus, plasma membrane | 15.69 | 92.64 |
| AT2G47980.1 | Thale cress | nucleus | 59.88 | 83.06 |
| PGSC0003DMT400041085 | Potato | nucleus | 36.57 | 60.61 |
| VIT_07s0104g01070.t01 | Wine grape | nucleus | 45.31 | 60.31 |
| KRH68087 | Soybean | nucleus | 42.88 | 57.99 |
| Zm00001d007679_P001 | Maize | cytosol | 20.88 | 57.61 |
| GSMUA_Achr7P03650_001 | Banana | nucleus, plastid | 40.84 | 56.34 |
| Solyc05g026510.2.1 | Tomato | nucleus | 41.69 | 54.98 |
| Os05t0188500-02 | Rice | nucleus | 38.67 | 52.78 |
| OQU83929 | Sorghum | nucleus | 38.74 | 51.85 |
| HORVU4Hr1G031480.1 | Barley | nucleus | 37.62 | 51.12 |
| TraesCSU01G181400.2 | Wheat | nucleus | 37.56 | 51.03 |
| TraesCS4A01G158700.1 | Wheat | nucleus | 37.56 | 50.94 |
| TraesCS4D01G147700.3 | Wheat | nucleus | 37.69 | 50.44 |
| PGSC0003DMT400050328 | Potato | cytosol | 5.65 | 48.86 |
| Zm00001d007677_P001 | Maize | cytosol | 18.32 | 44.36 |
| PGSC0003DMT400041086 | Potato | nucleus | 5.84 | 42.18 |
| PGSC0003DMT400050326 | Potato | plastid | 3.22 | 40.83 |
| PGSC0003DMT400017123 | Potato | cytosol | 5.65 | 40.76 |
Protein Annotations
| MapMan:13.3.5.1.5 | MapMan:22.6.6.2.4 | InterPro:ARM-type_fold | EnsemblPlantsGene:Bra004420 | EnsemblPlants:Bra004420.1 | EnsemblPlants:Bra004420.1-P |
| InterPro:DUF974 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0051455 | GO:GO:0051754 | InterPro:IPR020839 | UniProt:M4CJN6 | PFAM:PF06159 |
| PFAM:PF08514 | PFscan:PS51425 | PANTHER:PTHR11199 | PANTHER:PTHR11199:SF0 | InterPro:SCD | SUPFAM:SSF48371 |
| InterPro:STAG | UniParc:UPI0002547FC3 | SEG:seg | : | : | : |
Description
AT2G47980 (E=0.0) SCC3, ATSCC3 | SCC3 (SISTER-CHROMATID COHESION PROTEIN 3); binding
Coordinates
chrA05:-:52230..60656
Molecular Weight (calculated)
172729.0 Da
IEP (calculated)
5.963
GRAVY (calculated)
-0.360
Length
1523 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTGATQGPH SLAFRVMRLC KPSFHVDPPL RIDPFDLLAG EDFSDDPASA SLLRRHLSSA EGVDSDLSYR NRFLISHPTD PIGLSGLLLL PQSFGAIYLG
0101: ETFCSYISVN NSSTSQVRDV TIKAEIQTER QRILLLDTSK SPVESIRTGG RYDFIVEHDV KELGAHTLVC SALYNDADGE RKYLPQFFKF VVANPLSVRT
0201: KVRVVKETTF LEACIENHTK ANLFMDQVDF EPAKQWTALR LHDPSSQHPP SSVLGGIIPN PPVIIRSGGG IHNYLYKLVP SADVSGQTKL QGSSILGKFQ
0301: ITWRTNLGEP GRLQTQQILG APVSRKEINM RVVEVPTALH LNRPFSASLN LTNQTDRQLG PFEVSLLQDE SQMEKPVAIN GLQKLMLPRL EAFGSSDFQL
0401: NLIASKLGVQ KIGGITTFDT REKKTYELVP EMEKRTRDQD QDDDNSGGGE NQNQKQERST SQDQKSPELD DDDFQETRPQ SKRSRTLPSH QNLIEVVKGK
0501: VDLIPKAVKI WVERYENSPN LATSELLSML FQACGAKYSI KEHLLDETDV DDVVVALVNL ARSGEIEDYH TSRKKEHKNF KENLVSFWNC LITDSQNGPL
0601: FDKLLFDKCM DFIIALSCTP PRVYRHTATL MGLQLVTSFI SVANTLGSHR ETTQRQLNAE TKKRPDGPLL HSLNKRLSLS HQHITTLEDM MRKIFTGLFV
0701: HRYRDVDPDI RMSCIQSLGI WISSYPSLFL QDLYLKYLGW TLNDKAAGVR KASLLALRKL YEMDENVPTL GLFTERFSNR MIEMADDVDL SAAVCAIGLV
0801: KQLLRHQLIP DDDLGPLYDL LIDQPQEIRR AIGELVYDHL IAQKFNSSPS GLTGHDDSSS EIHIFRMLQI LREFSTDPIL SVYVIDDVWE YMKAMKDWKC
0901: IISMLLDQNP RTGSTTDEDT TNLVRLLFAS IRKAVGEKII PSTDNRKQYH SKAQREMFEN NRKDITVAMM KNYPQLLRKF MADKAKVSSL VEIVMFMKLE
1001: LYSLKRQEQS FKAAVRLIKD AFFMNGEKEA LRSCVKAITF CASESKGELQ DFSRGKLKDL EDTLFDKLTS AIKEVKDGND EYSLLVNLKR LYELQLLKPV
1101: LGESMYDELA MTLHDFRNLD EEVICFLLLN MHMYVVWSLH SVVNCETVSE ASLSSLISKR DILFAELTYF LNGVEESRKY GNQLALRICA LLAEEWCLFR
1201: KSTFESSKLE MLGYCPESVI LKKFWKLCEE IFNTSDETDE EDENKEYVAE TNRDVAAIAA CKLVNCGVVP KDYLGPEIIS HLVMHGPSVT EVIKNLITCL
1301: RKTEDDISSI YMESLKRGYQ RYESELSCDG GESRVEKCLQ VCRELAGRLS GMYVGAARNK HRLEILSVVK EGVEFAFRDA PKQMLFLEVA ILPFATRLSV
1401: PDIIDIKREV QGRIVHVNTD EDPSGWRPCF TFLETLEEKC LKTEDVQDDK EGVAVKRKGR PKKRAETERK RLFDEESGSD EDESISGGSD KEDKGDFVDE
1501: DAPLIETIRS AARRRALRGE RSK
0101: ETFCSYISVN NSSTSQVRDV TIKAEIQTER QRILLLDTSK SPVESIRTGG RYDFIVEHDV KELGAHTLVC SALYNDADGE RKYLPQFFKF VVANPLSVRT
0201: KVRVVKETTF LEACIENHTK ANLFMDQVDF EPAKQWTALR LHDPSSQHPP SSVLGGIIPN PPVIIRSGGG IHNYLYKLVP SADVSGQTKL QGSSILGKFQ
0301: ITWRTNLGEP GRLQTQQILG APVSRKEINM RVVEVPTALH LNRPFSASLN LTNQTDRQLG PFEVSLLQDE SQMEKPVAIN GLQKLMLPRL EAFGSSDFQL
0401: NLIASKLGVQ KIGGITTFDT REKKTYELVP EMEKRTRDQD QDDDNSGGGE NQNQKQERST SQDQKSPELD DDDFQETRPQ SKRSRTLPSH QNLIEVVKGK
0501: VDLIPKAVKI WVERYENSPN LATSELLSML FQACGAKYSI KEHLLDETDV DDVVVALVNL ARSGEIEDYH TSRKKEHKNF KENLVSFWNC LITDSQNGPL
0601: FDKLLFDKCM DFIIALSCTP PRVYRHTATL MGLQLVTSFI SVANTLGSHR ETTQRQLNAE TKKRPDGPLL HSLNKRLSLS HQHITTLEDM MRKIFTGLFV
0701: HRYRDVDPDI RMSCIQSLGI WISSYPSLFL QDLYLKYLGW TLNDKAAGVR KASLLALRKL YEMDENVPTL GLFTERFSNR MIEMADDVDL SAAVCAIGLV
0801: KQLLRHQLIP DDDLGPLYDL LIDQPQEIRR AIGELVYDHL IAQKFNSSPS GLTGHDDSSS EIHIFRMLQI LREFSTDPIL SVYVIDDVWE YMKAMKDWKC
0901: IISMLLDQNP RTGSTTDEDT TNLVRLLFAS IRKAVGEKII PSTDNRKQYH SKAQREMFEN NRKDITVAMM KNYPQLLRKF MADKAKVSSL VEIVMFMKLE
1001: LYSLKRQEQS FKAAVRLIKD AFFMNGEKEA LRSCVKAITF CASESKGELQ DFSRGKLKDL EDTLFDKLTS AIKEVKDGND EYSLLVNLKR LYELQLLKPV
1101: LGESMYDELA MTLHDFRNLD EEVICFLLLN MHMYVVWSLH SVVNCETVSE ASLSSLISKR DILFAELTYF LNGVEESRKY GNQLALRICA LLAEEWCLFR
1201: KSTFESSKLE MLGYCPESVI LKKFWKLCEE IFNTSDETDE EDENKEYVAE TNRDVAAIAA CKLVNCGVVP KDYLGPEIIS HLVMHGPSVT EVIKNLITCL
1301: RKTEDDISSI YMESLKRGYQ RYESELSCDG GESRVEKCLQ VCRELAGRLS GMYVGAARNK HRLEILSVVK EGVEFAFRDA PKQMLFLEVA ILPFATRLSV
1401: PDIIDIKREV QGRIVHVNTD EDPSGWRPCF TFLETLEEKC LKTEDVQDDK EGVAVKRKGR PKKRAETERK RLFDEESGSD EDESISGGSD KEDKGDFVDE
1501: DAPLIETIRS AARRRALRGE RSK
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
Arabidopsis Description
SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.