Factsheet for Os05t0188500-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931
nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0596900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47980.1	Os03t0596900-01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007679_P001	Maize	cytosol	40.86	82.61
OQU83929	Sorghum	nucleus	83.78	82.16
HORVU4Hr1G031480.1	Barley	nucleus	81.9	81.53
TraesCS4A01G158700.1	Wheat	nucleus	81.9	81.39
TraesCSU01G181400.2	Wheat	nucleus	81.63	81.27
TraesCS4D01G147700.3	Wheat	nucleus	81.99	80.4
Zm00001d007677_P001	Maize	cytosol	43.1	76.47
GSMUA_Achr7P03650_001	Banana	nucleus, plastid	64.78	65.49
CDY70560	Canola	cytosol	32.97	61.03
VIT_07s0104g01070.t01	Wine grape	nucleus	59.5	58.04
PGSC0003DMT400041085	Potato	nucleus	47.13	57.24
KRH68087	Soybean	nucleus	56.99	56.48
AT2G47980.1	Thale cress	nucleus	55.29	56.19
CDX80145	Canola	cytosol, nucleus, plastid	48.57	55.48
Solyc05g026510.2.1	Tomato	nucleus	55.47	53.59
PGSC0003DMT400041086	Potato	nucleus	8.96	47.39
CDY71521	Canola	cytosol, nucleus, plasma membrane	9.68	45.0
PGSC0003DMT400050328	Potato	cytosol	6.9	43.75
CDY72413	Canola	cytosol, nucleus, plasma membrane	9.68	41.86
Bra004420.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	52.78	38.67
PGSC0003DMT400050326	Potato	plastid	3.76	35.0
PGSC0003DMT400017123	Potato	cytosol	6.54	34.6

Protein Annotations

MapMan:13.3.5.1.5	EntrezGene:4338016	ProteinID:AAV31199.1	EMBL:AK069089	InterPro:ARM-type_fold	ProteinID:BAF16755.1
ProteinID:BAS92620.1	ProteinID:BAS92621.1	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0051455	GO:GO:0051754	InterPro:IPR020839
EnsemblPlantsGene:Os05g0188500	EnsemblPlants:Os05t0188500-02	PFAM:PF08514	PFscan:PS51425	PANTHER:PTHR11199	PANTHER:PTHR11199:SF0
UniProt:Q60D95	InterPro:SCD	SUPFAM:SSF48371	InterPro:STAG	UniParc:UPI000045042A	RefSeq:XP_015640274.1
SEG:seg	:	:	:	:	:

Description

Similar to SCC3. (Os05t0188500-01);Armadillo-type fold domain containing protein. (Os05t0188500-02)

Coordinates

chr5:+:5424434..5433010

Molecular Weight (calculated)

126863.0 Da

IEP (calculated)

5.457

GRAVY (calculated)

-0.433

Length

1116 amino acids

Sequence
(BLAST)

0001: MDETLASLRR PKRGRPPRPR EDHLAAEDFE EEGEDEEAEA EALARPQTKR KRAASAAAAA ALEDQTLIDI IKHNGRLISH AVKKLVEDYE SDPKSVMFQI
0101: LAMLFEACGA RHNFYADYLY EADVDGVVFS LVELAKKGMV EDNYNTKQKD LKNFKENLVS FWDTLVHECQ NGPLFDGSLF QKIKDYVVAL SCTPPRVYRQ
0201: VASLVGLQLV TSLISVAKTL SGQRETTQRQ LNAEKKKQTD GPIVESLNKK LAHTHKSITY LEELMRKIFS GLFMHRYRDV DPEIRMSCIK SLGIWVVSYP
0301: SLFLQDIYLK YLGWTLNDKN AGVRRTSILA LQSLYEVDEN IPSLGLFTER FYSRMIQLAD DVDISVAVSA IGLIKQLLRH QLLSDDDLGP LYDLLIDEPP
0401: LIRRAIGELV YDHLIAQNIK TSQSGARDGN NDSSEVHIGR MLQILREFSD DPVLSSYVID DIWDDMKAMK DWKCIISMLL DENPLTELTD MDGTNLVRML
0501: RASAKKAVGE RIVPATDNRK MYYNKGQKEI LENSKHEITT ALLKKYPQLL RKYISDKAKI SPLIDMMMLM KLELYSLKRQ DQHFKAAIDL IADAFFKHGD
0601: KETLRSCIKA ITFCCTNCQA DLQNYAENKL KDLEDELVLK VKTAIKEVEA GDDEYSLMVN LKRFYELQLS KPVKNDGLFE DMYRILSHLK DMDNEVKSFL
0701: LLNMYLQLAW CLNAIDGENP SEASIDELLS RQSSLFEKLY YYLVVLPTYQ KEGRSTTILS CRVCVITAEM WCLFKKPKYS STRLESLGYL PQLDVVQNFW
0801: KLCEQQLNIP DEIEDEDANE EYIEDTNKDV VMIAAAKLVL ADTVSKDYLG PELVSHYASH GTSTTEIIKH LITSLRKNAD NNMGALFFEA LKRGYERYMA
0901: HVSDGENQTL IGKSYSECQD LAGRLAGSYV GASRNKNKSE ILKIIQDGVS FAFVDLPKQL SFLEAALLPF VSKLPSSDIP DILIDVQKRT QDTNTNEDPS
1001: AWRPYFTFVE HLRDKHAKNE VLQEEKEEKP VKRRGRPRKV RDVPARNLFD GHKSSDEESV SDSDQQGHGE DNDDDDADQP LINTFRSSAS KLRSLKVSQQ
1101: GTSGQKGPSR ASGSNS

Best Arabidopsis Sequence Match ( AT2G47980.1 )
(BLAST)

0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH

Arabidopsis Description

SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.