Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47980.1 | KRG98502 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | KRG98507 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | KRH46360 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | KRH46364 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0104g01070.t01 | Wine grape | nucleus | 72.2 | 71.07 |
| CDY70560 | Canola | cytosol | 35.35 | 66.0 |
| PGSC0003DMT400041085 | Potato | nucleus | 51.33 | 62.89 |
| GSMUA_Achr7P03650_001 | Banana | nucleus, plastid | 61.1 | 62.32 |
| AT2G47980.1 | Thale cress | nucleus | 60.3 | 61.84 |
| CDX80145 | Canola | cytosol, nucleus, plastid | 53.02 | 61.11 |
| Zm00001d007679_P001 | Maize | cytosol | 29.04 | 59.24 |
| Solyc05g026510.2.1 | Tomato | nucleus | 60.57 | 59.05 |
| Os05t0188500-02 | Rice | nucleus | 56.48 | 56.99 |
| HORVU4Hr1G031480.1 | Barley | nucleus | 55.24 | 55.49 |
| TraesCS4A01G158700.1 | Wheat | nucleus | 55.33 | 55.48 |
| TraesCSU01G181400.2 | Wheat | nucleus | 55.06 | 55.31 |
| OQU83929 | Sorghum | nucleus | 55.77 | 55.18 |
| TraesCS4D01G147700.3 | Wheat | nucleus | 55.15 | 54.57 |
| PGSC0003DMT400041086 | Potato | nucleus | 9.95 | 53.08 |
| PGSC0003DMT400050328 | Potato | cytosol | 8.26 | 52.84 |
| Zm00001d007677_P001 | Maize | cytosol | 27.18 | 48.65 |
| CDY71521 | Canola | cytosol, nucleus, plasma membrane | 10.04 | 47.08 |
| CDY72413 | Canola | cytosol, nucleus, plasma membrane | 10.12 | 44.19 |
| Bra004420.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 57.99 | 42.88 |
| PGSC0003DMT400017123 | Potato | cytosol | 7.82 | 41.71 |
| PGSC0003DMT400050326 | Potato | plastid | 4.26 | 40.0 |
Protein Annotations
| EntrezGene:100810550 | MapMan:13.3.5.1.5 | EMBL:ACUP02002098 | InterPro:ARM-type_fold | InterPro:AT_hook_DNA-bd_motif | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_03G207600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | UniProt:I1JQF2 |
| InterPro:IPR020839 | EnsemblPlants:KRH68087 | ProteinID:KRH68087 | ProteinID:KRH68087.1 | PFAM:PF08514 | PFscan:PS51425 |
| PANTHER:PTHR11199 | PANTHER:PTHR11199:SF0 | InterPro:SCD | SMART:SM00384 | SUPFAM:SSF48371 | InterPro:STAG |
| UniParc:UPI0002339916 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:41493857..41503714
Molecular Weight (calculated)
127910.0 Da
IEP (calculated)
5.207
GRAVY (calculated)
-0.452
Length
1126 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDPAPPSEA SNRPPRKRGR PPKHLPKEHD ADADRTTVQA DRESSPDDFD EAPAKSKRNR ASEGTSSVAH KVSDQTLIEV VKGNGKFIPQ AVKFWVECYE
0101: KDPKPAMVDL LTMLFEACGA KYCDKSDLVD ETDVDEVVIA LVNCAKRGEV EDYQNSKKKE IKNFKENLES FWDNLVRECQ HGPLFDQVLF DKCMDYIIAL
0201: SCTPPRVYRQ VASLMGLSLV TSYITIANML RAQRETTQRQ LEAEKKKRTE GPRVDSLKKR SSDTHDRIQL LEEMMRKIFT GLFVHRYRDI DQNIRMSCIE
0301: SLGAWILSYP SLFLQDLYLK YLGWTLNDKN AGVRKASISA LQNLYEVDDN VPTLGLFTER FSSRMIELAD DIDVSVAVQA IGLVKQLLRH QLIPEDDLGP
0401: LYDLLIDDPP EIRHAIGALV YDHLIAQKFN SLQSGSRDET GNTSEVHLKR MLRILEEFPQ DPILSIYVID DVWEYMTAIK DWKCIISMLL DESPSVELSD
0501: SDATNLVRLL CASVKKAIGE RIVPATDNRK HYYNKAQKEV FESNKQDITV AMMKTYPLLL RKFISDKAKV SSLVEIVLHM NLEYYSLKRQ EQNFKNLLQL
0601: VKEAFFKHGD KDPLRACVKA IDFCCIESQG ELQDFARNKL KELEDEIIAK LKSAIKEVLD GGDEYSLLVN LKRLYELQLK RSVPINSLYE DIVTVLRGNR
0701: DMEDEVVGFL LLNMYLHLAW GLQSIVNEEA VSEASLNSLL SKRDTLLQEL EYFLNLADDN REGGKYTSEL GCRVCTILAE TWFLFRTTNF NKTKLEKLGY
0801: QPDTDMLQKF WELCQQQLNI SDEAEDEDVN KEYAVETNRD AVMIAAAKLI ANDVVPKEDL ASEIISHFVM HGTSVAEIIK HLITVLKKKD VDLASIFLEA
0901: LKKAYHRHLV NMSGSENVSS ENNSSSGCKD LAAKLSGTFI GVARIKHRPD ILKVVRDGIE YAFVDAPKQL SFLEEAVLHF VSKLTAPDLS DITKDVQQRT
1001: TNVNTDENPS GWRPYKVFIA NLLEKCAKNE GFQDEKEGVS VRRRGRPRKR QNIPGKKLFD EQSSSEDEDS ISAYEQDAQD EGKRQEDEDD DDRLINSIPS
1101: SSKLRSLGVS RGESKVSASR TSGASS
0101: KDPKPAMVDL LTMLFEACGA KYCDKSDLVD ETDVDEVVIA LVNCAKRGEV EDYQNSKKKE IKNFKENLES FWDNLVRECQ HGPLFDQVLF DKCMDYIIAL
0201: SCTPPRVYRQ VASLMGLSLV TSYITIANML RAQRETTQRQ LEAEKKKRTE GPRVDSLKKR SSDTHDRIQL LEEMMRKIFT GLFVHRYRDI DQNIRMSCIE
0301: SLGAWILSYP SLFLQDLYLK YLGWTLNDKN AGVRKASISA LQNLYEVDDN VPTLGLFTER FSSRMIELAD DIDVSVAVQA IGLVKQLLRH QLIPEDDLGP
0401: LYDLLIDDPP EIRHAIGALV YDHLIAQKFN SLQSGSRDET GNTSEVHLKR MLRILEEFPQ DPILSIYVID DVWEYMTAIK DWKCIISMLL DESPSVELSD
0501: SDATNLVRLL CASVKKAIGE RIVPATDNRK HYYNKAQKEV FESNKQDITV AMMKTYPLLL RKFISDKAKV SSLVEIVLHM NLEYYSLKRQ EQNFKNLLQL
0601: VKEAFFKHGD KDPLRACVKA IDFCCIESQG ELQDFARNKL KELEDEIIAK LKSAIKEVLD GGDEYSLLVN LKRLYELQLK RSVPINSLYE DIVTVLRGNR
0701: DMEDEVVGFL LLNMYLHLAW GLQSIVNEEA VSEASLNSLL SKRDTLLQEL EYFLNLADDN REGGKYTSEL GCRVCTILAE TWFLFRTTNF NKTKLEKLGY
0801: QPDTDMLQKF WELCQQQLNI SDEAEDEDVN KEYAVETNRD AVMIAAAKLI ANDVVPKEDL ASEIISHFVM HGTSVAEIIK HLITVLKKKD VDLASIFLEA
0901: LKKAYHRHLV NMSGSENVSS ENNSSSGCKD LAAKLSGTFI GVARIKHRPD ILKVVRDGIE YAFVDAPKQL SFLEEAVLHF VSKLTAPDLS DITKDVQQRT
1001: TNVNTDENPS GWRPYKVFIA NLLEKCAKNE GFQDEKEGVS VRRRGRPRKR QNIPGKKLFD EQSSSEDEDS ISAYEQDAQD EGKRQEDEDD DDRLINSIPS
1101: SSKLRSLGVS RGESKVSASR TSGASS
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
Arabidopsis Description
SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.