Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400037344 | |
| PGSC0003DMT400057390 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47980.1 | PGSC0003DMT400037344 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | PGSC0003DMT400057390 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041085 | Potato | nucleus | 71.67 | 9.36 |
| Zm00001d007677_P001 | Maize | cytosol | 35.0 | 6.68 |
| VIT_07s0104g01070.t01 | Wine grape | nucleus | 48.33 | 5.07 |
| CDX80145 | Canola | cytosol, nucleus, plastid | 40.83 | 5.02 |
| AT2G47980.1 | Thale cress | nucleus | 40.0 | 4.37 |
| KRH68087 | Soybean | nucleus | 40.0 | 4.26 |
| HORVU4Hr1G031480.1 | Barley | nucleus | 37.5 | 4.01 |
| GSMUA_Achr7P03650_001 | Banana | nucleus, plastid | 36.67 | 3.99 |
| TraesCS4D01G147700.3 | Wheat | nucleus | 36.67 | 3.87 |
| TraesCSU01G181400.2 | Wheat | nucleus | 35.83 | 3.84 |
| TraesCS4A01G158700.1 | Wheat | nucleus | 35.83 | 3.83 |
| Os05t0188500-02 | Rice | nucleus | 35.0 | 3.76 |
| OQU83929 | Sorghum | nucleus | 34.17 | 3.6 |
| Bra004420.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 40.83 | 3.22 |
| PGSC0003DMT400017123 | Potato | cytosol | 2.5 | 1.42 |
| Zm00001d007679_P001 | Maize | cytosol | 3.33 | 0.72 |
| PGSC0003DMT400050328 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400041086 | Potato | nucleus | 0.0 | 0.0 |
| CDY72413 | Canola | cytosol, nucleus, plasma membrane | 0.0 | 0.0 |
| CDY71521 | Canola | cytosol, nucleus, plasma membrane | 0.0 | 0.0 |
| CDY70560 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400050326 | EnsemblPlantsGene:PGSC0003DMG400019558 | PGSC:PGSC0003DMG400019558 | SEG:seg | UniParc:UPI000294D572 | UniProt:M1BQ46 |
| MapMan:35.2 | : | : | : | : | : |
Description
Stromal antigen [Source:PGSC_GENE;Acc:PGSC0003DMG400019558]
Coordinates
chr00:+:10588944..10589408
Molecular Weight (calculated)
13599.5 Da
IEP (calculated)
7.273
GRAVY (calculated)
0.210
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MHLHICSCLH SIINSGSVLE QSISSFISKR SALFELLEFF LTTKSPEGLR ASQLACCVIS EQWWLFRRAT FASTELEALG YSPDKSILQK FWKLCECQLN
101: IPGGFCSPSQ SMFSLNLWQL
101: IPGGFCSPSQ SMFSLNLWQL
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
Arabidopsis Description
SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.