Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47980.1 | EER91265 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | OQU91413 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007679_P001 | Maize | cytosol | 44.11 | 90.94 |
| Os05t0188500-02 | Rice | nucleus | 82.16 | 83.78 |
| HORVU4Hr1G031480.1 | Barley | nucleus | 78.38 | 79.57 |
| TraesCSU01G181400.2 | Wheat | nucleus | 77.94 | 79.13 |
| TraesCS4A01G158700.1 | Wheat | nucleus | 78.03 | 79.07 |
| TraesCS4D01G147700.3 | Wheat | nucleus | 78.21 | 78.21 |
| GSMUA_Achr7P03650_001 | Banana | nucleus, plastid | 62.57 | 64.49 |
| CDY70560 | Canola | cytosol | 32.25 | 60.86 |
| VIT_07s0104g01070.t01 | Wine grape | nucleus | 58.08 | 57.78 |
| PGSC0003DMT400041085 | Potato | nucleus | 45.17 | 55.93 |
| CDX80145 | Canola | cytosol, nucleus, plastid | 47.89 | 55.78 |
| KRH68087 | Soybean | nucleus | 55.18 | 55.77 |
| AT2G47980.1 | Thale cress | nucleus | 53.51 | 55.46 |
| Solyc05g026510.2.1 | Tomato | nucleus | 53.16 | 52.38 |
| PGSC0003DMT400041086 | Potato | nucleus | 8.61 | 46.45 |
| CDY71521 | Canola | cytosol, nucleus, plasma membrane | 8.79 | 41.67 |
| PGSC0003DMT400050328 | Potato | cytosol | 6.33 | 40.91 |
| CDY72413 | Canola | cytosol, nucleus, plasma membrane | 8.88 | 39.15 |
| Bra004420.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 51.85 | 38.74 |
| PGSC0003DMT400050326 | Potato | plastid | 3.6 | 34.17 |
| PGSC0003DMT400017123 | Potato | cytosol | 5.98 | 32.23 |
Protein Annotations
| MapMan:13.3.5.1.5 | EntrezGene:8082041 | UniProt:A0A1Z5RK08 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051455 |
| GO:GO:0051754 | InterPro:IPR020839 | EnsemblPlants:OQU83929 | ProteinID:OQU83929 | ProteinID:OQU83929.1 | ProteinID:OQU83931.1 |
| PFAM:PF08514 | PFscan:PS51425 | PANTHER:PTHR11199 | PANTHER:PTHR11199:SF0 | InterPro:SCD | EnsemblPlantsGene:SORBI_3005G200900 |
| SUPFAM:SSF48371 | InterPro:STAG | unigene:Sbi.11187 | UniParc:UPI000B8BAFC1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr5:-:68642014..68650773
Molecular Weight (calculated)
129414.0 Da
IEP (calculated)
5.814
GRAVY (calculated)
-0.375
Length
1138 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEETLASLRR PKRRGRPPRP REEYHAADFE DVADAEGLAP PQSKRKRAAS AAAAASLEDQ PLIDIIKHNG RLISHAVKRL VEDYESKKNL VTFQILTMLF
0101: EACGAKHEIY PDYLRESDVD DIVVSLVDLA RKGLVEDNYN SKHKDLKNFK ENLVCFWDSL VLECQNGPLF DDLLFQKIKD YVVALSCAPP RVYRQVASLT
0201: GLQLVTSFIS VAKTLSGQRE TTQRQLNAEK KKQSDGPLIE SLNNRLALTH ANITYLEELM RKIFSGLFMH RYRDVDPEIR MSCIRSLGIW VVSYPSLFLQ
0301: DIYLKYLGWT LNDKNAGVRR TSVLALQSLY EVDDNIPSLG LFTERFYTRM IQLADDIDVS VAVSAIGLIK QLLRHQLLSD DDLGPLYDLL IDEPPMIRRA
0401: IGELVYDHLI AQNIKTSHPG ARDGENEPSE VHIGRMLQIL REFSDDPVLS SYVIDDIWDD MKAMKDWRCI VSVLLDENPA IELTDMDGTN LVRMLRESAR
0501: KAVGERIVPA VDNRKLYYNK GQKYLQEILE NSRREITTAL LTRYPQLLRK FISDKAKISP LVDMMTLLKL ELYSYKRQEK HFKTAIDLIA DAFFKHGEKG
0601: PLRSCIKAIL FCCTECQADL KDYAENKLKN LEDELVLKVR TAIKEVEAGD DEYSLLVNLK RFYELQLSKP VKNDSLFEDM YRILAHLRDM DNEVKSFLLL
0701: NMYLQVAWCL QAIDGENPSE TCIDELLSKQ STLFDQLYYY LVVLPTYQKE GRSTTVLSCR VCIITAEMWC LFKKSKYSST RLESLGYLPQ SDMVQKFWKL
0801: CEQQLNISDE TEDEDANEEY IEDTNRDAVM IAAAKLVLAD TVSKVCAVFS SCDKDYLGPE IVSHYVSHGA STTEIIKHLI TSLKKNTNFD MGALFFEALK
0901: RAYERYMAHV HEGENQILTG KSYSECQDLA SHLAGSYVGA ARIKNKSDIL KIIQDGVSFA FVDLPNQLSF LEAALLPFVS KLQSSDIPDI LADVEKRTQD
1001: TNMVGDQGAW RPYFTFVEHL RDKHAKNEVL HEEEEKPVRR RGRPRKVRDV PDVPDLRSGR DVRGKKLFRD DGHNSSGEES ISASDHQGHG EDDDSDGDAD
1101: QPLINTIRSS AAKLRSLKIA QQGTSSHKGV SGPSGSNS
0101: EACGAKHEIY PDYLRESDVD DIVVSLVDLA RKGLVEDNYN SKHKDLKNFK ENLVCFWDSL VLECQNGPLF DDLLFQKIKD YVVALSCAPP RVYRQVASLT
0201: GLQLVTSFIS VAKTLSGQRE TTQRQLNAEK KKQSDGPLIE SLNNRLALTH ANITYLEELM RKIFSGLFMH RYRDVDPEIR MSCIRSLGIW VVSYPSLFLQ
0301: DIYLKYLGWT LNDKNAGVRR TSVLALQSLY EVDDNIPSLG LFTERFYTRM IQLADDIDVS VAVSAIGLIK QLLRHQLLSD DDLGPLYDLL IDEPPMIRRA
0401: IGELVYDHLI AQNIKTSHPG ARDGENEPSE VHIGRMLQIL REFSDDPVLS SYVIDDIWDD MKAMKDWRCI VSVLLDENPA IELTDMDGTN LVRMLRESAR
0501: KAVGERIVPA VDNRKLYYNK GQKYLQEILE NSRREITTAL LTRYPQLLRK FISDKAKISP LVDMMTLLKL ELYSYKRQEK HFKTAIDLIA DAFFKHGEKG
0601: PLRSCIKAIL FCCTECQADL KDYAENKLKN LEDELVLKVR TAIKEVEAGD DEYSLLVNLK RFYELQLSKP VKNDSLFEDM YRILAHLRDM DNEVKSFLLL
0701: NMYLQVAWCL QAIDGENPSE TCIDELLSKQ STLFDQLYYY LVVLPTYQKE GRSTTVLSCR VCIITAEMWC LFKKSKYSST RLESLGYLPQ SDMVQKFWKL
0801: CEQQLNISDE TEDEDANEEY IEDTNRDAVM IAAAKLVLAD TVSKVCAVFS SCDKDYLGPE IVSHYVSHGA STTEIIKHLI TSLKKNTNFD MGALFFEALK
0901: RAYERYMAHV HEGENQILTG KSYSECQDLA SHLAGSYVGA ARIKNKSDIL KIIQDGVSFA FVDLPNQLSF LEAALLPFVS KLQSSDIPDI LADVEKRTQD
1001: TNMVGDQGAW RPYFTFVEHL RDKHAKNEVL HEEEEKPVRR RGRPRKVRDV PDVPDLRSGR DVRGKKLFRD DGHNSSGEES ISASDHQGHG EDDDSDGDAD
1101: QPLINTIRSS AAKLRSLKIA QQGTSSHKGV SGPSGSNS
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
Arabidopsis Description
SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.