Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47980.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G158700.1 | Wheat | nucleus | 98.13 | 97.95 |
| HORVU4Hr1G031480.1 | Barley | nucleus | 96.88 | 96.88 |
| TraesCS4D01G147700.3 | Wheat | nucleus | 98.31 | 96.84 |
| Os05t0188500-02 | Rice | nucleus | 81.27 | 81.63 |
| Zm00001d007679_P001 | Maize | cytosol | 38.63 | 78.44 |
| OQU83929 | Sorghum | nucleus | 79.13 | 77.94 |
| Zm00001d007677_P001 | Maize | cytosol | 40.05 | 71.38 |
| GSMUA_Achr7P03650_001 | Banana | nucleus, plastid | 62.18 | 63.13 |
| CDY70560 | Canola | cytosol | 31.94 | 59.37 |
| VIT_07s0104g01070.t01 | Wine grape | nucleus | 58.43 | 57.26 |
| PGSC0003DMT400041085 | Potato | nucleus | 45.5 | 55.5 |
| KRH68087 | Soybean | nucleus | 55.31 | 55.06 |
| CDX80145 | Canola | cytosol, nucleus, plastid | 47.28 | 54.25 |
| AT2G47980.1 | Thale cress | nucleus | 52.99 | 54.1 |
| Solyc05g026510.2.1 | Tomato | nucleus | 53.35 | 51.77 |
| PGSC0003DMT400050328 | Potato | cytosol | 6.96 | 44.32 |
| PGSC0003DMT400041086 | Potato | nucleus | 8.21 | 43.6 |
| CDY71521 | Canola | cytosol, nucleus, plasma membrane | 8.74 | 40.83 |
| CDY72413 | Canola | cytosol, nucleus, plasma membrane | 8.74 | 37.98 |
| Bra004420.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 51.03 | 37.56 |
| PGSC0003DMT400050326 | Potato | plastid | 3.84 | 35.83 |
| PGSC0003DMT400017123 | Potato | cytosol | 6.51 | 34.6 |
Protein Annotations
| MapMan:13.3.5.1.5 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051455 | GO:GO:0051754 | InterPro:IPR020839 |
| PFAM:PF08514 | PFscan:PS51425 | PANTHER:PTHR11199 | PANTHER:PTHR11199:SF0 | InterPro:SCD | SUPFAM:SSF48371 |
| InterPro:STAG | EnsemblPlantsGene:TraesCSU01G181400 | EnsemblPlants:TraesCSU01G181400.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrUn:+:272172403..272180182
Molecular Weight (calculated)
127748.0 Da
IEP (calculated)
5.413
GRAVY (calculated)
-0.390
Length
1121 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAETIASMRR PKRGRPPRPR ESDFVTGEEF EDEEEGEDHA EAADGLAPPR SKRKREVSTA AAAALEDLTL IDIVKHNGRL ISHAVKRLVE DYESNPKSVL
0101: FQILTMLFEV CGARHDIYAS DLHEAAVDDI VFKLAELARK GLVDDNYSSK RKDLKNFKEN LVTFWDSLVL ECQNGPLFDD NLFTTIKDYV VAVSCTPPRV
0201: YRQVASLVGL QLVTSFISVA KTLSGQRETT QRQLNAEKKK HSDGPAVESL NKRLSITHEN ITYLEESMRK IFSGLFMHRY RDVDPEIRIL CIKSLGIWVV
0301: SYPSLFLQDI YLKYLGWTLN DKNAGVRRTS ILALQSLYDV DDNIPSLGLF TERFYSRMIQ LADDIDISVA VPAIGLIKQL LRHQLLSDDD LGPLYDLLID
0401: EPPMIRRAIG ELVYDHLIAQ NCKTPSVARD GDNESSEIHI SRMLHILREF SDDPVLSSYV IDDIWDDMKA MKDWKCIISM LLDETPIAEL TDMDGTNLVR
0501: MLRASAKKAV GERIVPATDS RKMYYNKSQK EMLENSKGDI TNALMKRYPQ LLRKYLPDKA KISPLIDMMM LLKLEMYSLK RQEQNFKAVI DLIVDAFFKH
0601: GDKDTLRSCI KAIAFCCTKC QADLLDYAEN KLKILEDELV LKVKTAIKEV EAGDDEYSLL VNLKRLHELQ LSKPVKNDGL FEDMYQILSH LKEMDNEVKS
0701: FLLINMFLEV AWCLNAIDVE NPSETSIEGL SSKQRSLFEQ LYYFLVVLSN YQKEGRSTTV LSSRVCIITA EMWCLFKKSK YSSTKLKNLG YLPQLEYVQK
0801: FWKLCEQQLN ISDDTEDEDA NEEYIEDTNR DAVMIAAAKL LLADTVSKDY LGPEIVSHYV SHGASTTEII KHLITALKKN ANSDIAALFF EALRRAYERY
0901: MTYLREGENQ NLIAKSYSEC QDLANRLAGY YVGAVRIKNK SEILKIIQCG VQFAFVDLPK QLSFLEAALV PFVSKLPSSD IPDILTDVQK RAQDTDMNED
1001: PSAWRPYLTF VEHLREKHAR NEVFHEEKEE KPVKRRGRPR KPRDEPVRNL FDGNKSSDEE SVSDSDQRGH GGDDDDEDDA FDQPLINTFR PSASKLRSLK
1101: GVSQQGTSSQ RKAPTASGSN S
0101: FQILTMLFEV CGARHDIYAS DLHEAAVDDI VFKLAELARK GLVDDNYSSK RKDLKNFKEN LVTFWDSLVL ECQNGPLFDD NLFTTIKDYV VAVSCTPPRV
0201: YRQVASLVGL QLVTSFISVA KTLSGQRETT QRQLNAEKKK HSDGPAVESL NKRLSITHEN ITYLEESMRK IFSGLFMHRY RDVDPEIRIL CIKSLGIWVV
0301: SYPSLFLQDI YLKYLGWTLN DKNAGVRRTS ILALQSLYDV DDNIPSLGLF TERFYSRMIQ LADDIDISVA VPAIGLIKQL LRHQLLSDDD LGPLYDLLID
0401: EPPMIRRAIG ELVYDHLIAQ NCKTPSVARD GDNESSEIHI SRMLHILREF SDDPVLSSYV IDDIWDDMKA MKDWKCIISM LLDETPIAEL TDMDGTNLVR
0501: MLRASAKKAV GERIVPATDS RKMYYNKSQK EMLENSKGDI TNALMKRYPQ LLRKYLPDKA KISPLIDMMM LLKLEMYSLK RQEQNFKAVI DLIVDAFFKH
0601: GDKDTLRSCI KAIAFCCTKC QADLLDYAEN KLKILEDELV LKVKTAIKEV EAGDDEYSLL VNLKRLHELQ LSKPVKNDGL FEDMYQILSH LKEMDNEVKS
0701: FLLINMFLEV AWCLNAIDVE NPSETSIEGL SSKQRSLFEQ LYYFLVVLSN YQKEGRSTTV LSSRVCIITA EMWCLFKKSK YSSTKLKNLG YLPQLEYVQK
0801: FWKLCEQQLN ISDDTEDEDA NEEYIEDTNR DAVMIAAAKL LLADTVSKDY LGPEIVSHYV SHGASTTEII KHLITALKKN ANSDIAALFF EALRRAYERY
0901: MTYLREGENQ NLIAKSYSEC QDLANRLAGY YVGAVRIKNK SEILKIIQCG VQFAFVDLPK QLSFLEAALV PFVSKLPSSD IPDILTDVQK RAQDTDMNED
1001: PSAWRPYLTF VEHLREKHAR NEVFHEEKEE KPVKRRGRPR KPRDEPVRNL FDGNKSSDEE SVSDSDQRGH GGDDDDEDDA FDQPLINTFR PSASKLRSLK
1101: GVSQQGTSSQ RKAPTASGSN S
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
Arabidopsis Description
SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.