Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47980.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G181400.2 | Wheat | nucleus | 96.84 | 98.31 |
| TraesCS4A01G158700.1 | Wheat | nucleus | 96.92 | 98.22 |
| HORVU4Hr1G031480.1 | Barley | nucleus | 95.61 | 97.06 |
| Os05t0188500-02 | Rice | nucleus | 80.4 | 81.99 |
| Zm00001d007679_P001 | Maize | cytosol | 38.31 | 78.99 |
| OQU83929 | Sorghum | nucleus | 78.21 | 78.21 |
| Zm00001d007677_P001 | Maize | cytosol | 39.81 | 72.02 |
| GSMUA_Achr7P03650_001 | Banana | nucleus, plastid | 61.34 | 63.22 |
| CDY70560 | Canola | cytosol | 31.55 | 59.54 |
| VIT_07s0104g01070.t01 | Wine grape | nucleus | 57.65 | 57.34 |
| PGSC0003DMT400041085 | Potato | nucleus | 45.25 | 56.04 |
| KRH68087 | Soybean | nucleus | 54.57 | 55.15 |
| CDX80145 | Canola | cytosol, nucleus, plastid | 46.75 | 54.45 |
| AT2G47980.1 | Thale cress | nucleus | 52.46 | 54.37 |
| Solyc05g026510.2.1 | Tomato | nucleus | 52.64 | 51.86 |
| PGSC0003DMT400050328 | Potato | cytosol | 6.94 | 44.89 |
| PGSC0003DMT400041086 | Potato | nucleus | 8.08 | 43.6 |
| CDY71521 | Canola | cytosol, nucleus, plasma membrane | 8.61 | 40.83 |
| CDY72413 | Canola | cytosol, nucleus, plasma membrane | 8.61 | 37.98 |
| Bra004420.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 50.44 | 37.69 |
| PGSC0003DMT400050326 | Potato | plastid | 3.87 | 36.67 |
| PGSC0003DMT400017123 | Potato | cytosol | 6.41 | 34.6 |
Protein Annotations
| MapMan:13.3.5.1.5 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051455 | GO:GO:0051754 | InterPro:IPR020839 |
| PFAM:PF08514 | PFscan:PS51425 | PANTHER:PTHR11199 | PANTHER:PTHR11199:SF0 | InterPro:SCD | SUPFAM:SSF48371 |
| InterPro:STAG | EnsemblPlantsGene:TraesCS4D01G147700 | EnsemblPlants:TraesCS4D01G147700.3 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4D:+:139203413..139210993
Molecular Weight (calculated)
129791.0 Da
IEP (calculated)
5.467
GRAVY (calculated)
-0.363
Length
1138 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAETIASMRR PKRGRPPRPR ESDFVTGEEF EDEEEGEDHG EAADGLAPPR SKRKREASAA AAAALEDLTL IDIVKHNGRL ISHAVKRLVE DYESNPKSVL
0101: FQILTMLFEV CGARHDIYAS DLHEAAVDDI VFKLAELARK GLVDDNYSSK RKDLKNFKEN LVTFWDSLVL ECQNGPLFDD NLFTTIKDYV VAISCTPPRV
0201: YRQVASLVGL QLVTSFISVA KTLSGQRETT QRQLNAEKKK HSDGPAVESL NKRLSITHEN ITYLEESMRK IFSGLFMHRY RDVDPEIRML CIKSLGIWVV
0301: SYPSLFLQDI YLKYLGWTLN DKNAGVRRTS ILALQSLYDV DDNIPSLGLF TERFYSRMIQ LADDIDISVA VPAIGLIKQL LRHQLLSDDD LGPLYDLLID
0401: EPPMIRRAIG ELVYDHLIAQ NCKTPSVARD GDNESSEIHI SRMLHILREF SDDPVLSSYV IDDIWDDMKA MKDWKCVISM LLDETPIAEL TDMDGTNLVR
0501: MLRASAKKAV GERIVLATDN RKMYYNKAQK EILENSKSDI TNALMKRYPQ LLRKYLPDKA KISPLIDMMM LLKLEMYSLK RQEQNFKAAI DLIVDAFFKH
0601: GDKDTLRSCI KAIAFCCTKC QADLLDYAEN KLKTLEDELV LKVKTAIKEV EAGDDEYSLL VNLKRLHELQ LSKPVKNDGL FEDMYRILSH LKEMDNEVKS
0701: FLLINMFLEV AWCLHAIDVE NPSETSIEGL SSKQRSLFEQ LYYFLVVLSN YQKEGRSTTV LSSRVCTITA EMWCLFKKSK YSSTKLKNLG YLPQLEYVQK
0801: FWKLCEQQLN ISDDTEDEDA NEEYIEDTNR DAVMIAAAKL LLADTVSKDY LGPEIVSHYV SHGASTTEII KHLITALKKN ANSDIAALFF EALRRVLLFI
0901: FECTCYLFTN LQVYERYMAY LREGENQNLI AKSYSECQDL ANRLAGYYVG AVRIKNKSEI LKIIQCGVQF AFVDLPKQLS FLEAALVPFV SKLPSSDIPD
1001: ILTDVQKRAQ DIDMNEDPSA WRPYLTFVEH LREKHARNEV FHEEKEEKPV KRRGRPRKPR DEPVRNLFDG NKSSDEESVS DSDQRGHGGD DDDEDDAFDQ
1101: PLINTFRPSA SKLRSLKGVS QQGTSSQRKA PTASGSNS
0101: FQILTMLFEV CGARHDIYAS DLHEAAVDDI VFKLAELARK GLVDDNYSSK RKDLKNFKEN LVTFWDSLVL ECQNGPLFDD NLFTTIKDYV VAISCTPPRV
0201: YRQVASLVGL QLVTSFISVA KTLSGQRETT QRQLNAEKKK HSDGPAVESL NKRLSITHEN ITYLEESMRK IFSGLFMHRY RDVDPEIRML CIKSLGIWVV
0301: SYPSLFLQDI YLKYLGWTLN DKNAGVRRTS ILALQSLYDV DDNIPSLGLF TERFYSRMIQ LADDIDISVA VPAIGLIKQL LRHQLLSDDD LGPLYDLLID
0401: EPPMIRRAIG ELVYDHLIAQ NCKTPSVARD GDNESSEIHI SRMLHILREF SDDPVLSSYV IDDIWDDMKA MKDWKCVISM LLDETPIAEL TDMDGTNLVR
0501: MLRASAKKAV GERIVLATDN RKMYYNKAQK EILENSKSDI TNALMKRYPQ LLRKYLPDKA KISPLIDMMM LLKLEMYSLK RQEQNFKAAI DLIVDAFFKH
0601: GDKDTLRSCI KAIAFCCTKC QADLLDYAEN KLKTLEDELV LKVKTAIKEV EAGDDEYSLL VNLKRLHELQ LSKPVKNDGL FEDMYRILSH LKEMDNEVKS
0701: FLLINMFLEV AWCLHAIDVE NPSETSIEGL SSKQRSLFEQ LYYFLVVLSN YQKEGRSTTV LSSRVCTITA EMWCLFKKSK YSSTKLKNLG YLPQLEYVQK
0801: FWKLCEQQLN ISDDTEDEDA NEEYIEDTNR DAVMIAAAKL LLADTVSKDY LGPEIVSHYV SHGASTTEII KHLITALKKN ANSDIAALFF EALRRVLLFI
0901: FECTCYLFTN LQVYERYMAY LREGENQNLI AKSYSECQDL ANRLAGYYVG AVRIKNKSEI LKIIQCGVQF AFVDLPKQLS FLEAALVPFV SKLPSSDIPD
1001: ILTDVQKRAQ DIDMNEDPSA WRPYLTFVEH LREKHARNEV FHEEKEEKPV KRRGRPRKPR DEPVRNLFDG NKSSDEESVS DSDQRGHGGD DDDEDDAFDQ
1101: PLINTFRPSA SKLRSLKGVS QQGTSSQRKA PTASGSNS
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
Arabidopsis Description
SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.