Factsheet for GSMUA_Achr7P03650_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47980.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007679_P001	Maize	cytosol	34.51	69.02
CDY70560	Canola	cytosol	35.69	65.34
Os05t0188500-02	Rice	nucleus	65.49	64.78
VIT_07s0104g01070.t01	Wine grape	nucleus	66.58	64.25
OQU83929	Sorghum	nucleus	64.49	62.57
HORVU4Hr1G031480.1	Barley	nucleus	63.22	62.27
TraesCSU01G181400.2	Wheat	nucleus	63.13	62.18
TraesCS4A01G158700.1	Wheat	nucleus	63.13	62.07
PGSC0003DMT400041085	Potato	nucleus	51.54	61.92
TraesCS4D01G147700.3	Wheat	nucleus	63.22	61.34
KRH68087	Soybean	nucleus	62.32	61.1
CDX80145	Canola	cytosol, nucleus, plastid	52.54	59.37
AT2G47980.1	Thale cress	nucleus	57.52	57.83
Solyc05g026510.2.1	Tomato	nucleus	59.69	57.06
Zm00001d007677_P001	Maize	cytosol	30.62	53.74
PGSC0003DMT400050328	Potato	cytosol	7.79	48.86
PGSC0003DMT400041086	Potato	nucleus	9.33	48.82
CDY71521	Canola	cytosol, nucleus, plasma membrane	9.24	42.5
Bra004420.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	56.34	40.84
CDY72413	Canola	cytosol, nucleus, plasma membrane	9.33	39.92
PGSC0003DMT400050326	Potato	plastid	3.99	36.67
PGSC0003DMT400017123	Potato	cytosol	6.88	36.02

Protein Annotations

Gene3D:1.25.10.10	MapMan:13.3.5.1.5	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0051455	GO:GO:0051754
EnsemblPlantsGene:GSMUA_Achr7G03650_001	EnsemblPlants:GSMUA_Achr7P03650_001	EnsemblPlants:GSMUA_Achr7T03650_001	InterPro:IPR011989	InterPro:IPR020839	UniProt:M0TEF5
PFAM:PF08514	PFscan:PS51425	PANTHER:PTHR11199	PANTHER:PTHR11199:SF0	InterPro:SCD	SUPFAM:SSF48371
InterPro:STAG	UniParc:UPI00029628DB	SEG:seg	:	:	:

Description

Putative Cohesin subunit SA-1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G03650_001]

Coordinates

chr7:-:2886781..2898979

Molecular Weight (calculated)

124959.0 Da

IEP (calculated)

6.330

GRAVY (calculated)

-0.337

Length

1104 amino acids

Sequence
(BLAST)

0001: MEHAAVVSET SVRRSKRGRP PLAASDVGPS KSSGSAGEKA DHSPTDGDQG SGDGSYDGLD DPAPKAKRKR GAAIRAAGWK EDQSLIDIIK HNGRVINHAV
0101: KKWVERYEGD PKSAMVEILM FLFEACGAKY QLEAASFDET DVDDVVVSLV ELAKNGEVED HVNSKQKELK SFKENLASFW DNLVLECQNG PLFDKVLFEK
0201: CMDFVIALSC TPPRVYRQVA SLVGLQLVTS FINIAKILSG QRETTQRQLN AEKKKQNEGP RLESLNKRLS LTHEKITATE EMMRKIFTGL FMHRYRDVDP
0301: EIRMSCIRSL GIWILSYPSL FLQDLYLKYL GWTLNDKSAG VRKASILALQ NLYEVDDNVP SLGLFTERFC NRMIELADDI DISVAVSAIG LLKQLLRHQL
0401: LTDDELGPLY DLLIDEPPLI RRAIGELVYD HLIAQKIKNS HSGRKDGENE SSEVHLGRML QILREFPDDP ILSAYVIDDV WDDMKAMKDW KCIISMLLDE
0501: NPLIELTDVD ATNLVRLLYA SARKAVGEKI VPATDNRKQY YTKAQKEALE NSRREITAAM MKSYPQLLRK YISDKAKVSP LVEILGLLKL ELYSLKRQEQ
0601: NFKTILELIV DAFFKHGEKD TLRSCIKVLT FCSTDSQADL QDYVQNKLKD LESDIIIKLK AAMKEVEMGG DEYSLLVNLK RLYELQLTKF VSINGLYEDM
0701: ASILRDLSDI DNEVKCFLLL NMYLHVAWCL QSIDSDSLLE ASTTALLSKR DILLEQLESF TRTLPDAPQE GRSGIVLSCR VCIILAETWC LFKKSKYSST
0801: RLHSLGYSPN LPSIQNFWKL SEQLLKISDE TEDEDANEEY IEETNRDAVM IAAAKLVATH TVSKDYLAPE IFSHFVMHGT SISEIIKHLI TALRKTANDE
0901: IPTIFLEALK RSYKRHTVDL SSGSNESLAS KSYSDCKELA SRLSATFTGA ARNKHKSEIL NVVKDGISYA FLEAPKHLSF LEAAVLPFVS KLPTSDILEI
1001: LKDVQKRSEN VNIDEDPSGW RPYSVFVDHL QEKYAKNEGL QDEKEGNVVR RRGRPRKARN LEGKKLFDGH ESIEINENCT ARKHRNCKEQ QVTAADIRLL
1101: FLRK

Best Arabidopsis Sequence Match ( AT2G47980.1 )
(BLAST)

0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH

Arabidopsis Description

SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.