Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47980.1 | CDX89318 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | CDX94304 | AT4G26630.1 | 25387881 |
| AT2G47980.1 | CDX97358 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80145 | Canola | cytosol, nucleus, plastid | 95.02 | 58.65 |
| Zm00001d007679_P001 | Maize | cytosol | 52.74 | 57.61 |
| AT2G47980.1 | Thale cress | nucleus | 85.9 | 47.18 |
| PGSC0003DMT400041085 | Potato | nucleus | 63.68 | 41.78 |
| PGSC0003DMT400050328 | Potato | cytosol | 10.78 | 36.93 |
| VIT_07s0104g01070.t01 | Wine grape | nucleus | 69.65 | 36.71 |
| GSMUA_Achr7P03650_001 | Banana | nucleus, plastid | 65.34 | 35.69 |
| KRH68087 | Soybean | nucleus | 66.0 | 35.35 |
| Solyc05g026510.2.1 | Tomato | nucleus | 64.18 | 33.51 |
| Os05t0188500-02 | Rice | nucleus | 61.03 | 32.97 |
| OQU83929 | Sorghum | nucleus | 60.86 | 32.25 |
| HORVU4Hr1G031480.1 | Barley | nucleus | 59.54 | 32.02 |
| TraesCSU01G181400.2 | Wheat | nucleus | 59.37 | 31.94 |
| TraesCS4A01G158700.1 | Wheat | nucleus | 59.37 | 31.88 |
| TraesCS4D01G147700.3 | Wheat | nucleus | 59.54 | 31.55 |
| PGSC0003DMT400017123 | Potato | cytosol | 5.31 | 15.17 |
| CDX80144 | Canola | mitochondrion | 7.13 | 9.79 |
| Zm00001d007677_P001 | Maize | cytosol | 7.46 | 7.15 |
| PGSC0003DMT400041086 | Potato | nucleus | 0.5 | 1.42 |
| PGSC0003DMT400050326 | Potato | plastid | 0.0 | 0.0 |
| CDY71521 | Canola | cytosol, nucleus, plasma membrane | 0.0 | 0.0 |
| CDY72413 | Canola | cytosol, nucleus, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY70560 | EnsemblPlantsGene:GSBRNA2T00004382001 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-type_fold | InterPro:IPR020839 |
| InterPro:SCD | InterPro:STAG | PANTHER:PTHR11199 | PANTHER:PTHR11199:SF0 | PFAM:PF08514 | PFscan:PS51425 |
| ProteinID:CDY70560 | ProteinID:CDY70560.1 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0004EEE6B1 | UniProt:A0A078JVT0 |
| MapMan:13.3.5.1.5 | : | : | : | : | : |
Description
BnaC04g51720DBnaC04g51720D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JVT0]
Coordinates
chrLK042521:+:55..3206
Molecular Weight (calculated)
69399.1 Da
IEP (calculated)
5.879
GRAVY (calculated)
-0.478
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAKRRRDQ DQDQDQDDDS GGENQNQNQN QKQERSASED QKSPELDDDD FQETRPQSKR SRTLPPHQNL IEVVKGNVDL IPKAVKIWVE RYENSPNLAT
101: SQLLSMLFEA CGAKYSIKED LLDETDVDDV VVALVNLARS GEIEDYHTSR KKEHKNFKEN LVSFWNYLIT ESQNGPLFDK VLFDKCMDFI IALSCTPPRV
201: YRQTATLMGL QLVTSFISVA NTLGSQRETT QRQLNAETKK RPDGPLLDSL NKRLSLTHQH ITTLEDMMRK IFTGLFVHRY RDVDPDIRMS CIQSLGIWIS
301: SYPSLFLQDL YLKYLGWTLN DKAAGVRKAS LLALRKLYEM DENVPTLGLF TERFSNRMIE MADDVDLSAA VCAIGLVKQL LRHQLIPDDD LGPLYDLLID
401: QPQEIRRAIG ELVYDHLIAQ KFNSSPSGLT GHDDSSSEIH IFRMLQILRE FSTDPILSVY VIDDVWEYMK AMKDWKCIIS MLLDQNPRTG STTDEDSTNL
501: VRLLFASIRK AVGEKIIPST DNRKQYHSKA QREMFENNRK DITVAMMKNY PQLLRKFMAD KAKVSSLVEI VMFMKLELYS LKRQEQTFKA AVRLIKDAFF
601: MNG
101: SQLLSMLFEA CGAKYSIKED LLDETDVDDV VVALVNLARS GEIEDYHTSR KKEHKNFKEN LVSFWNYLIT ESQNGPLFDK VLFDKCMDFI IALSCTPPRV
201: YRQTATLMGL QLVTSFISVA NTLGSQRETT QRQLNAETKK RPDGPLLDSL NKRLSLTHQH ITTLEDMMRK IFTGLFVHRY RDVDPDIRMS CIQSLGIWIS
301: SYPSLFLQDL YLKYLGWTLN DKAAGVRKAS LLALRKLYEM DENVPTLGLF TERFSNRMIE MADDVDLSAA VCAIGLVKQL LRHQLIPDDD LGPLYDLLID
401: QPQEIRRAIG ELVYDHLIAQ KFNSSPSGLT GHDDSSSEIH IFRMLQILRE FSTDPILSVY VIDDVWEYMK AMKDWKCIIS MLLDQNPRTG STTDEDSTNL
501: VRLLFASIRK AVGEKIIPST DNRKQYHSKA QREMFENNRK DITVAMMKNY PQLLRKFMAD KAKVSSLVEI VMFMKLELYS LKRQEQTFKA AVRLIKDAFF
601: MNG
0001: MEDSPQGLKR SRDPDQDQDD DSGEAGKADG SGGENQERSS DQIELDDDDF QETRPKPKRS RTHPPQQNLI EVVKGNGDLI SKAVKIWVER YEDSPSLATT
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
0101: ELLSMLFQAC GAKYSIKDDL LDETDVDDVV VSLVNLARAG ELEDYQSSRK KELKNFKENL VSFWNNLIIE CQNGPLFDRV LFDKCMDYII ALSCTPPRVY
0201: RQTATLMGLQ LVTSFISVAN TLGSQRETTQ RQLNAESKKR ADGPRVDSLN KRLSVTHEQI TTLEDMMRKI FTGLFVHRYR DIDNDIRMSC IQSLGIWILS
0301: YPSLFLQDLY LKYLGWTLND KNAGVRKASL LALQKLYEMD ENVPTLGLFT QRFSNRMIEM ADDVDMSAAV CAIGLVKQLL RHQLIPDDDL GPLYDLLIDQ
0401: PQEIRRAIGE LVYDHLIAQK FNSSPSSLTG HDDSSSEIHI FRMLQILREF STDPILCVYV IDDVWEYMKA MKDWKCIISM LLDQNPRTGS TTDEDSTNLI
0501: RLLFVSIRKA VGEKIIPSTD NRKQYHSKAQ REIFENNRKD ITVAMMKNYP QLLRKFMADK AKVSSLVEII IFMKLELYSL KRQEQSFKAA VRLIKDAFFK
0601: HGEKEALRSC VKAITFCASE SKGELQDFSR GKLKDLEDEL LDKITSAIRE VKDGNDEYSL LVNLKRLYEL QLSKPVLVES MFDEIALTLH NFRNLDEEVI
0701: CFLLLNMHMY LAWYLHSIIN CEAISEASLS SLISKRDTLF EELSYFLNGI EESKKYGNQL SNRICAILAE TWCLFRKSNY DSGKLERLGY CPDSVFLEKF
0801: WKLCAEMFNT SDETDEEDEN KEYIEETNRD VSVIAACKLV ASDVVPKDYL GPEIISHLGM HGPGVTGIIK NLITFLRKKE DDISNIYLES LKRAYHRYSS
0901: ELSSGREESR VDKCLEEWRE LAGGLSGMYI GAARNKYRLE ILSVVKEGVE FAFRDAPKQL LFLEVAILPF ATRLSVSDII DIKKDVQGRI VHVNTDEDPS
1001: GWRPCFTFLE TLEEKCLKNE DLQDDKEAAN VRRRGRPRKR PETERKRLFD EQSGSDEDES ISGGSDREDK LDEDAPLIET IRSAARRKAL KGERSKGH
Arabidopsis Description
SCC3SCC3 [Source:UniProtKB/TrEMBL;Acc:A0A178VN21]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.