Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010432.1-P | Field mustard | nucleus | 68.1 | 73.03 |
| CDX94304 | Canola | nucleus | 24.57 | 68.19 |
| CDX89318 | Canola | nucleus | 33.39 | 57.53 |
| AT4G26630.1 | Thale cress | nucleus | 32.48 | 51.64 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 23.17 | 46.91 |
| CDY06563 | Canola | nucleus | 25.97 | 45.85 |
| CDY17352 | Canola | extracellular, vacuole | 28.69 | 42.03 |
| CDY28645 | Canola | nucleus | 27.45 | 41.99 |
| CDY20754 | Canola | nucleus | 26.88 | 41.06 |
| KRG98507 | Soybean | nucleus | 23.41 | 38.64 |
| Solyc07g065490.2.1 | Tomato | nucleus | 20.03 | 38.33 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 10.96 | 38.22 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 20.36 | 36.16 |
| KRH46360 | Soybean | nucleus | 21.93 | 35.95 |
| Solyc10g006000.2.1 | Tomato | nucleus | 15.99 | 35.02 |
| KRH46364 | Soybean | nucleus | 22.84 | 34.32 |
| KRG98502 | Soybean | nucleus | 20.45 | 33.97 |
| CDX77921 | Canola | nucleus | 11.13 | 31.69 |
| CDY37915 | Canola | nucleus | 10.88 | 31.21 |
| CDY69625 | Canola | nucleus | 7.5 | 31.16 |
| CDY62886 | Canola | nucleus | 11.79 | 29.42 |
| Os03t0596900-01 | Rice | nucleus | 16.65 | 28.73 |
| EER91265 | Sorghum | nucleus | 15.17 | 28.53 |
| Zm00001d033159_P001 | Maize | nucleus | 10.22 | 27.74 |
| Zm00001d013757_P010 | Maize | nucleus | 14.92 | 27.72 |
| CDY41517 | Canola | nucleus | 11.13 | 27.55 |
| CDY39861 | Canola | nucleus | 8.16 | 27.42 |
| CDY05865 | Canola | plastid | 7.17 | 27.19 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 7.09 | 26.79 |
| CDX81185 | Canola | nucleus | 11.87 | 25.71 |
| CDY16716 | Canola | nucleus | 11.54 | 25.18 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 16.16 | 20.16 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 15.91 | 19.73 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 16.08 | 19.46 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 15.75 | 19.27 |
| OQU91413 | Sorghum | nucleus | 13.19 | 11.84 |
Protein Annotations
| Gene3D:1.10.10.60 | Gene3D:2.130.10.10 | MapMan:35.2 | GO:A0A078EDB7 | EnsemblPlants:CDX97358 | ProteinID:CDX97358 |
| ProteinID:CDX97358.1 | ncoils:Coil | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00104453001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF08766 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR43991 | PANTHER:PTHR43991:SF5 | SMART:SM00320 | SUPFAM:SSF109715 |
| SUPFAM:SSF50978 | UniParc:UPI0004EE5416 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g12230D
Coordinates
chrLK031899:-:4570..11823
Molecular Weight (calculated)
134869.0 Da
IEP (calculated)
4.951
GRAVY (calculated)
-1.093
Length
1213 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGEEDTKATV EPTATDTSSL EKPSEATEGK KEEEKAGGKE TEEEPKKAEP DTMEIDAEKK KDEELEVKSN EDDAGTDKME EDVTVTKDEG QAEATKMDED
0101: ANGQKEQTGD GVSGGGTVED TVMKENVESG DGNNAKDDEK QESKEADQKK AGKESEEDVI NEGDTANGTK DEKTGDINEK YKKVETVDEN NKEQNKEEDL
0201: AEEGKEEEDK EIEKAKVEDE ERSEDENDNE QVESQPAKED EKEERNDDKE DEKAESGDDK EEEKEKSKSS KKRGKGKSSG EKVGKKTKNE EEKKDSEPKT
0301: PFSDRPVRER KSVERLVAVI DTDSFKEFRI EKGPGAYLKD IPSVAYKVTR KKSDETLKLL HTILFGGRRG KAPQVKTNIL SFSGFVWHGN EEKAKEKIKE
0401: KFDKCIKDKL VEFCEMFDIH VTKATTKEDI VTKLFEFLEK PHAKGDAPAS EKEKSSKGAK RKRTPKKSSP AAATSSSKRS AKSQRKSEEG TKAAKKGLAL
0501: SEDEAEEEKE GEKQEKEQKS AEEEENVNGI PDKSEDEAPQ PSESEEKAES EEERSEEETP KKKKKRGSKL SAEKKESAGR ARNKKASVAA KSSPPEKVTQ
0601: KRSSSKRKKT DDDSDISPKV PSKRKKSERV TKASTSTPSK SASKEKPEVK GAGKGKEKTK GPSDKVLKNA IIKILKRVDF NIATFTDIIK ELGKEFKDDL
0701: TPRKLSIKLM IQSELTKLAG EAEEEKIEEK EEDAEKKKAG GQKKDRLLVC SPFSDIVQFS QYPSSGSRGS QCPVNMSGHH GEEAEAEHME DDDTLGADFE
0801: NLMCSADTTA SQAPNRKDIQ GIPWDKLSLT REEYRKSRLQ SYRNYENIPN SGEASGKDCL DSEKGSSFYR FKKNFRSVTP TILHFQLREL VWATSNHDVY
0901: LMCNNSITHW STLTSSRDEV LDLAGLVTPS EEHPGSLLEG FSKTHVSSLA VKDGMVVAGG FSGELICKHL DRPGVSFCYR LASEENAITN SVNIHRNSSG
1001: ALHFMASSND GGVRNFDMET YQLVQHFHYP WPVNHSSVSP DGKLVTIVGD DPDGLLVDSN NGETVGRLYG HLDYSFASAW HPDGVTFATG NQDKTCRVWD
1101: VRNLSKSVAI LKGNLGAIRS IKFTSDGQYM AMAEAADFVH IYNTNTGYMK EQEIDFFGEI SGISFSPDTE SLFIGVYDRS YGSLMEFARE RVHNTFQFHI
1201: SIIQLGADGM SCV
0101: ANGQKEQTGD GVSGGGTVED TVMKENVESG DGNNAKDDEK QESKEADQKK AGKESEEDVI NEGDTANGTK DEKTGDINEK YKKVETVDEN NKEQNKEEDL
0201: AEEGKEEEDK EIEKAKVEDE ERSEDENDNE QVESQPAKED EKEERNDDKE DEKAESGDDK EEEKEKSKSS KKRGKGKSSG EKVGKKTKNE EEKKDSEPKT
0301: PFSDRPVRER KSVERLVAVI DTDSFKEFRI EKGPGAYLKD IPSVAYKVTR KKSDETLKLL HTILFGGRRG KAPQVKTNIL SFSGFVWHGN EEKAKEKIKE
0401: KFDKCIKDKL VEFCEMFDIH VTKATTKEDI VTKLFEFLEK PHAKGDAPAS EKEKSSKGAK RKRTPKKSSP AAATSSSKRS AKSQRKSEEG TKAAKKGLAL
0501: SEDEAEEEKE GEKQEKEQKS AEEEENVNGI PDKSEDEAPQ PSESEEKAES EEERSEEETP KKKKKRGSKL SAEKKESAGR ARNKKASVAA KSSPPEKVTQ
0601: KRSSSKRKKT DDDSDISPKV PSKRKKSERV TKASTSTPSK SASKEKPEVK GAGKGKEKTK GPSDKVLKNA IIKILKRVDF NIATFTDIIK ELGKEFKDDL
0701: TPRKLSIKLM IQSELTKLAG EAEEEKIEEK EEDAEKKKAG GQKKDRLLVC SPFSDIVQFS QYPSSGSRGS QCPVNMSGHH GEEAEAEHME DDDTLGADFE
0801: NLMCSADTTA SQAPNRKDIQ GIPWDKLSLT REEYRKSRLQ SYRNYENIPN SGEASGKDCL DSEKGSSFYR FKKNFRSVTP TILHFQLREL VWATSNHDVY
0901: LMCNNSITHW STLTSSRDEV LDLAGLVTPS EEHPGSLLEG FSKTHVSSLA VKDGMVVAGG FSGELICKHL DRPGVSFCYR LASEENAITN SVNIHRNSSG
1001: ALHFMASSND GGVRNFDMET YQLVQHFHYP WPVNHSSVSP DGKLVTIVGD DPDGLLVDSN NGETVGRLYG HLDYSFASAW HPDGVTFATG NQDKTCRVWD
1101: VRNLSKSVAI LKGNLGAIRS IKFTSDGQYM AMAEAADFVH IYNTNTGYMK EQEIDFFGEI SGISFSPDTE SLFIGVYDRS YGSLMEFARE RVHNTFQFHI
1201: SIIQLGADGM SCV
001: MGEDTKATIE PTANKTTSLE KPSEAMAGKE NAGGKETQEL AKDEDMAEPD NMEIDAQIKK DDEKAETEDK ESEVKKNEDN AETQKMEEKV EVTKDEGQAE
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:Q9SUA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.