CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008756.1-P	Field mustard	plastid	89.59	87.36
CDX69580	Canola	plastid	75.25	83.99
AT5G14460.1	Thale cress	plastid	83.69	78.89
KRH56525	Soybean	plastid	63.65	66.8
GSMUA_Achr6P06680_001	Banana	mitochondrion	53.63	64.54
VIT_14s0066g00320.t01	Wine grape	plastid	62.28	60.96
OQU77211	Sorghum	plastid	55.8	57.96
Solyc02g093460.2.1	Tomato	plastid	60.71	57.33
PGSC0003DMT400032834	Potato	plastid	60.9	57.2
Zm00001d035698_P001	Maize	mitochondrion	53.63	54.82
TraesCS1A01G024700.1	Wheat	mitochondrion	53.83	54.8
TraesCS1D01G024800.1	Wheat	mitochondrion	54.22	54.33
TraesCS1B01G031100.1	Wheat	mitochondrion	53.44	53.54
HORVU1Hr1G003530.7	Barley	plastid	54.03	49.73
CDY25279	Canola	cytosol	6.88	6.65
CDY50671	Canola	cytosol	6.88	6.65
CDY33839	Canola	cytosol	6.68	6.53
CDX67680	Canola	cytosol	6.68	6.22

Protein Annotations

MapMan:16.6.3.2	Gene3D:3.30.2350.10	GO:A0A078F8Z9	UniProt:A0A078F8Z9	EnsemblPlants:CDY09856	ProteinID:CDY09856
ProteinID:CDY09856.1	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009982	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00031599001	HAMAP:MF_01080	PFAM:PF01509	PFAM:PF16198
PANTHER:PTHR13767	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SUPFAM:SSF55120	TIGRFAMs:TIGR00431	InterPro:TruB_C
UniParc:UPI0004EE535B	SEG:seg	InterPro:tRNA_psdUridine_synth_TruB	:	:	:

Description

BnaC09g43050DBnaC09g43050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8Z9]

Coordinates

chrLK031999:-:574275..576474

Molecular Weight (calculated)

57762.4 Da

IEP (calculated)

8.659

GRAVY (calculated)

-0.704

Length

509 amino acids

Sequence
(BLAST)

001: MAKSLHFTRL MSSSAITALS SHFPFSIKPR IIHKPYFFSS TPYPLQYDMI INRPTQSSLS QPRRRPQSPR AIESTSSPDP DFDSWVDNKL ASEREKGRPG
101: SGDPEMDKEK RKYYSKRRKR LYGSDSEDEG GRKSDEGFVE LKPEVVEFDR LHQREEELYF YDTFAYPWEK DKHYKMVYQL EKKYFPDQGL DKAFLQPGES
201: PSGKVTGKKK RDGGDAENCD DEKFVFFDEV KDKEKVEESV TEKKVEQFFK GLTKSANERG VASGGGDGDG EPFLVTRNGE LPPRWDGPNG TVLLVNKPKG
301: WTSFTVCGKL RRIVKVKKVG HAGTLDPMAT GLLIVCVGKA TKVVDRYQGM IKGYSGVFRL GEATSTLDAD SPVIQREPWE HIKDDDIKKA LTSFLGEIWQ
401: VPPMFSAIKV GGEKMYDKAR RGETVELSPR RISIFQFDIE RSLDDRQNLI FRVVCSKGTY IRSLCADLAK ALGSCAHLTA LRRDSIGEYS ANDAWEFNEL
501: EAAITKNYF

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.