Factsheet for PGSC0003DMT400032834

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 2
mitochondrion 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	endoplasmic reticulum
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093460.2.1	Tomato	plastid	91.88	92.39
VIT_14s0066g00320.t01	Wine grape	plastid	65.31	68.08
KRH56525	Soybean	plastid	59.96	67.01
GSMUA_Achr6P06680_001	Banana	mitochondrion	48.71	62.41
CDY09856	Canola	plastid	57.2	60.9
Bra008756.1-P	Field mustard	plastid	58.49	60.73
AT5G14460.1	Thale cress	plastid	57.93	58.15
CDX69580	Canola	plastid	46.68	55.48
OQU77211	Sorghum	plastid	49.26	54.49
TraesCS1A01G024700.1	Wheat	mitochondrion	49.08	53.2
TraesCS1B01G031100.1	Wheat	mitochondrion	49.82	53.15
TraesCS1D01G024800.1	Wheat	mitochondrion	49.82	53.15
Zm00001d035698_P001	Maize	mitochondrion	48.34	52.61
HORVU1Hr1G003530.7	Barley	plastid	49.26	48.28
PGSC0003DMT400018869	Potato	cytosol	7.01	6.63

Protein Annotations

EntrezGene:102583778	MapMan:16.6.3.2	Gene3D:3.30.2350.10	ncoils:Coil	GO:GO:0001522	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	UniProt:M1AY56
HAMAP:MF_01080	PFAM:PF01509	PFAM:PF16198	EnsemblPlantsGene:PGSC0003DMG400012609	PGSC:PGSC0003DMG400012609	EnsemblPlants:PGSC0003DMT400032834
PANTHER:PTHR13767	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SUPFAM:SSF55120	TIGRFAMs:TIGR00431	InterPro:TruB_C
UniParc:UPI0002956191	RefSeq:XP_006338629.1	SEG:seg	InterPro:tRNA_psdUridine_synth_TruB	:	:

Description

TRNA-pseudouridine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400012609]

Coordinates

chr2:+:47503146..47509299

Molecular Weight (calculated)

61578.2 Da

IEP (calculated)

8.962

GRAVY (calculated)

-0.682

Length

542 amino acids

Sequence
(BLAST)

001: MAKSVVIPRM SLIFLRSKSI SSFSQSGTIF FPSMLNSLLL KSHSLHFFST TSTPYPLQYE MIISRPANPP SPTLKSRQQR FLPNSKPTDS ETEPGSELGF
101: DDWVDRKLNS KSSSPQAEPE PEEPNSGIMK MDKGKRKYYN KRRKRMFGGS DSEDENNRDK DNELVELKQE VVELPTLHKK EEELYFYDNF AYPWEKDKHY
201: KMVYQLEKKF FPDQGFDKAF LDPGQSNENV KRSKKKLGKK ENIIEKDIDG GDGKSLIFFE EEEKSVSSET KEEAKVDVSE KKVEEFFKCL KKVPNKENGV
301: ASAEPFLATR STGLPPKWDS PGGTVVLVNK PKGWTSFTVC GKLRRLTKVK KVGHAGTLDP MATGLLIVCV GRSTKIVDSY QGMMKGYSGI FRLGEATSTW
401: DADSPVIQRD PWEHIKDEDI KKTAASFFGE IWQVPPMFSA IKVGGEKMYD KARRGESIEL APRRISIFEF DVKRSLDDRQ NVIFRVRCSK GTYVRSLCAD
501: FGKALGSCAH LTALRRDSIG EYTADDAWEF QELEEAITKG YL

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.