Factsheet for Zm00001d035698_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77211	Sorghum	plastid	83.53	84.9
TraesCS1D01G024800.1	Wheat	mitochondrion	72.29	70.87
TraesCS1A01G024700.1	Wheat	mitochondrion	71.08	70.8
TraesCS1B01G031100.1	Wheat	mitochondrion	71.89	70.47
HORVU1Hr1G003530.7	Barley	plastid	71.89	64.74
GSMUA_Achr6P06680_001	Banana	mitochondrion	51.0	60.05
KRH56525	Soybean	plastid	55.62	57.11
CDY09856	Canola	plastid	54.82	53.63
VIT_14s0066g00320.t01	Wine grape	plastid	55.02	52.69
Bra008756.1-P	Field mustard	plastid	55.02	52.49
AT5G14460.1	Thale cress	plastid	55.62	51.3
Solyc02g093460.2.1	Tomato	plastid	53.21	49.17
PGSC0003DMT400032834	Potato	plastid	52.61	48.34
CDX69580	Canola	plastid	44.18	48.25
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	8.84	7.55
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	8.23	7.08
Zm00001d008327_P001	Maize	plasma membrane	8.03	6.86

Protein Annotations

MapMan:16.6.3.2	Gene3D:3.30.2350.10	UniProt:A0A1D6LHY7	ProteinID:AQK79476.1	GO:GO:0001522	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	HAMAP:MF_01080
PFAM:PF01509	PANTHER:PTHR13767	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SUPFAM:SSF55120	TIGRFAMs:TIGR00431
UniParc:UPI0008456B39	EnsemblPlantsGene:Zm00001d035698	EnsemblPlants:Zm00001d035698_P001	EnsemblPlants:Zm00001d035698_T001	SEG:seg	InterPro:tRNA_psdUridine_synth_TruB

Description

Pseudouridine synthase family protein

Coordinates

chr6:-:41672018..41676772

Molecular Weight (calculated)

56418.2 Da

IEP (calculated)

9.462

GRAVY (calculated)

-0.628

Length

498 amino acids

Sequence
(BLAST)

001: MPPRAGAMAA AAARARAALL PSSPSPSPLF RLPRRFLSLT ATRYPLYYDL IVHRPADPNP PKSSAAGADR QPQPAPEEQT LDRAKRRYLR KRRSRLLPDP
101: DATTTTKPSS LSSEFVELRP EVVDFPRLHA REEALYFHDT FAMPWEKDKH YRMLYRLEKK YFPHQSLDNA FVSADAAPAS DADRGLVFFD DEKKENEGEE
201: RAVSDKGANK GEVLERKVED FFRSLKKGPG QVDTKAKRPG TEPQQQVKRE VRREEERPQP YLVTRTTELP PRWDGPAGTV VLIDKPKGWT SFTVCGKLRR
301: LVKVQKVGHA GTLDPMATGL LIVCVGKATK IVDSYQGMVK GYSGVFRLGE ATSTWDADSP IIQREPWEHI KDENIRKAAA SFMGEIWQVP PMFSAIKVGG
401: EKMYDKARKG ETVELSPRRI SIYQFDIERS LEDRQNLIFR VTCSKGTYIR SLCADLVYTF SCSCAHLTAL RRDSIGEYSV NDAWNFDELE EQITKGYL

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.