Factsheet for Zm00001d008327_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038622_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	Zm00001d038622_P001	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02707	Sorghum	cytosol	94.68	94.52
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	91.6	92.23
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	87.82	87.82
CDY25279	Canola	cytosol	65.35	72.43
CDY33839	Canola	cytosol	64.15	71.78
CDY50671	Canola	cytosol	64.67	71.67
Bra003270.1-P	Field mustard	cytosol	67.07	71.48
CDX67680	Canola	cytosol	67.07	71.48
VIT_08s0007g00190.t01	Wine grape	cytosol	70.84	70.48
PGSC0003DMT400018869	Potato	cytosol	68.78	69.98
GSMUA_Achr11P...	Banana	cytosol	60.72	69.82
AT3G57150.1	Thale cress	cytosol	67.24	69.38
Bra033149.1-P	Field mustard	cytosol	64.67	68.92
KRH43875	Soybean	nucleus	67.24	67.59
KRH10580	Soybean	nucleus	67.92	67.23
Solyc02g081810.2.1	Tomato	nucleus	68.78	67.17
GSMUA_Achr11P...	Banana	nucleus	70.67	64.68
GSMUA_Achr8P15080_001	Banana	nucleus	61.06	40.83
Zm00001d035698_P001	Maize	mitochondrion	6.86	8.03

Protein Annotations

EntrezGene:100502498	MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ProteinID:AQK89591.1	EMBL:BT088364
UniProt:C4JC17	ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982
GO:GO:0009987	GO:GO:0019013	GO:GO:0030529	InterPro:IPR002478	PFAM:PF01472	PFAM:PF01509
PFAM:PF08068	PFAM:PF16198	PFscan:PS50890	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N
InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451	InterPro:TruB_C	UniParc:UPI0001A4BF91	InterPro:Uncharacterised_CHP00451	EnsemblPlantsGene:Zm00001d008327	EnsemblPlants:Zm00001d008327_P001
EnsemblPlants:Zm00001d008327_T001	SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:

Description

H/ACA ribonucleoprotein complex subunit 4

Coordinates

chr8:+:5397381..5399132

Molecular Weight (calculated)

64215.3 Da

IEP (calculated)

9.736

GRAVY (calculated)

-0.599

Length

583 amino acids

Sequence
(BLAST)

001: MSSTTPAIAS PASEQAKSKK KKHRSKDDPS AAAADPPSLA EAEEKTDGYL IKPQSLVPSL DTSTWPLLLK NYDRLNVRTG HYTPLPSGHS PLKRPLAEHL
101: RYGIINLDKP SNPSSHEVVA WIKRILRVEK TGHSGTLDPK VTGNLIVCID RATRLVKSQQ GAGKEYVCVA RFHAAVPDTA RVARALEALT GAVFQRPPLI
201: SAVKRQLRVR TIYESKLLEH DPERHLAVFW ISCEAGTYVR TLCVHLGLLL GVGAHMQELR RVRSGILGEQ DNMVTMHDVM DAMWSLDNYK DESYLRRVVM
301: PLEVLLTSYK RLVVKDSAVN AICYGAKLMI PGLLRFENDI ETGEEVVLMT TKGEAIAIGI AEMTTAVMAT CDHGAVSKIK RVVMDRDTYP RKWGLGPVAL
401: KKKKLVAEGL LDKHGKPNEK TPTEWLRNVV LPTGGDVSIA SIAAAPEPEK VKVEPDTAVT EEVKEKKKKR QKDDAEDTDA SVPAKKIKVE EATEAVEGEK
501: SEKKKKKKKD KGESEPAEVV EGKEEVATGD EKGSEKKKKK KKSKEASDAA KPESAQIGDG TGTEKSEKKK EKKKKSRDTE EAQ

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.