CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY15463
CDY51392

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	CDY15463	AT1G03530.1	17712600
AT3G57150.1	CDY51392	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003270.1-P	Field mustard	cytosol	99.45	99.45
CDY33839	Canola	cytosol	90.68	95.2
CDY25279	Canola	cytosol	84.46	87.83
CDY50671	Canola	cytosol	84.1	87.45
AT3G57150.1	Thale cress	cytosol	82.45	79.82
TraesCS2D01G156900.1	Wheat	cytosol	70.75	73.02
Os04t0576300-01	Rice	nucleus, plastid	26.33	72.36
PGSC0003DMT400018869	Potato	cytosol	74.59	71.2
TraesCS2D01G157000.1	Wheat	nucleus	71.48	70.32
Os11t0598700-00	Rice	mitochondrion	25.78	69.8
KRH43875	Soybean	nucleus	72.39	68.28
VIT_08s0007g00190.t01	Wine grape	cytosol	73.13	68.26
KRH10580	Soybean	nucleus	73.31	68.08
Solyc02g081810.2.1	Tomato	nucleus	74.22	68.01
Zm00001d008327_P001	Maize	plasma membrane	71.48	67.07
EER99769	Sorghum	cytosol, nucleus, plastid	71.66	66.89
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	70.75	66.84
EES02707	Sorghum	cytosol	71.3	66.78
GSMUA_Achr11P...	Banana	cytosol	61.61	66.47
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	70.57	66.21
Os03t0370500-02	Rice	nucleus	70.75	65.48
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	72.03	65.12
Os07t0636000-01	Rice	nucleus	71.3	65.0
TraesCS2B01G177000.1	Wheat	nucleus	72.03	64.91
TraesCS2A01G151800.1	Wheat	cytosol	71.85	64.64
GSMUA_Achr11P...	Banana	nucleus	70.02	60.13
HORVU2Hr1G027370.1	Barley	cytosol	64.17	54.67
HORVU2Hr1G027400.5	Barley	plastid	63.8	51.1
GSMUA_Achr8P15080_001	Banana	nucleus	61.79	38.76
CDY09856	Canola	plastid	6.22	6.68
CDX69580	Canola	plastid	5.48	6.58

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	GO:A0A078BSU0	EnsemblPlants:CDX67680	ProteinID:CDX67680
ProteinID:CDX67680.1	ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00098853001	InterPro:IPR002478
PFAM:PF01472	PFAM:PF01509	PFAM:PF08068	PFAM:PF16198	PFscan:PS50890	InterPro:PUA
InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136	SUPFAM:SSF55120
SUPFAM:SSF88697	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	InterPro:TruB_C	UniParc:UPI0004EEDCB9	InterPro:Uncharacterised_CHP00451
SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:	:

Description

BnaA07g17200D

Coordinates

chrLK031787:-:1705445..1707088

Molecular Weight (calculated)

60934.6 Da

IEP (calculated)

9.870

GRAVY (calculated)

-0.613

Length

547 amino acids

Sequence
(BLAST)

001: MTEVEEVPSD TGDYMIKPQS FTPAIDTSQW PLLLKNYDLL NVRTGHYTPI SSGHSPLKRP LIDYIRYGVI NLDKPSNPSS HEVVAWIKRI LRVEKTGHSG
101: TLDPKVTGNL IVCIDRATRL VKSQQGAGKE YVCVARLHSA VPDVAKVARA LESLTGAVFQ RPPLISAVKR QLRIRTIYQS KLLEYDADRH LVVFWVSCEA
201: GTYIRTMCVH LGLLLGVGGH MQELRRVRSG ILGENDNMVT MHDVMDAQWM YDNYKDESYL RRVIMPLEVI LTSYKRLVVK DSAVNAICYG AKLMIPGLLR
301: FENDIDVGTE VVLMTTKGEA IAVGIAEMTT SVMATCDHGV VAKIKRVVMD RDTYPRKWGL GPRASMKKKL IADGKLDKHG KPNEKTPVEW SRNVVLPTGG
401: DAIIAGAAAA PEKVVAVVEK VEAENGEVSK RKHKRDESSD SPAPVSTKKA KTKDVEGGEG EEKVKSEKKE KKKKKDKEEE KEEVATPKSE KKKKKSKETD
501: EAASAEKSEK KKKKKSKEAD EAASAEKSEK KKKKDKKKKS KDSEDEE

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.