Factsheet for TraesCS2D01G156900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G322700.1
TraesCS1B01G335000.1
TraesCS1D01G323100.1
TraesCS6A01G230600.1
TraesCS6B01G251300.1
TraesCS6D01G204400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	TraesCS1A01G322700.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS1B01G335000.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS1D01G323100.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS6A01G230600.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS6B01G251300.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS6D01G204400.1	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G157000.1	Wheat	nucleus	96.79	92.27
TraesCS2A01G151800.1	Wheat	cytosol	96.98	84.54
TraesCS2B01G177000.1	Wheat	nucleus	96.6	84.35
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	96.04	84.13
Os04t0576300-01	Rice	nucleus, plastid	30.0	79.9
EER99769	Sorghum	cytosol, nucleus, plastid	88.11	79.69
Os07t0636000-01	Rice	nucleus	88.49	78.17
Os11t0598700-00	Rice	mitochondrion	29.43	77.23
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	84.15	76.5
Os03t0370500-02	Rice	nucleus	85.09	76.31
CDY25279	Canola	cytosol	70.75	71.29
Bra003270.1-P	Field mustard	cytosol	73.21	70.93
CDY50671	Canola	cytosol	70.38	70.91
CDX67680	Canola	cytosol	73.02	70.75
CDY33839	Canola	cytosol	69.43	70.63
AT3G57150.1	Thale cress	cytosol	73.02	68.5
Bra033149.1-P	Field mustard	cytosol	70.57	68.37
KRH43875	Soybean	nucleus	73.4	67.07
PGSC0003DMT400018869	Potato	cytosol	72.45	67.02
VIT_08s0007g00190.t01	Wine grape	cytosol	73.58	66.55
GSMUA_Achr11P...	Banana	cytosol	63.58	66.47
KRH10580	Soybean	nucleus	73.02	65.7
HORVU2Hr1G027370.1	Barley	cytosol	78.87	65.11
Solyc02g081810.2.1	Tomato	nucleus	73.21	64.99
GSMUA_Achr11P...	Banana	nucleus	73.58	61.22
HORVU2Hr1G027400.5	Barley	plastid	77.55	60.18
GSMUA_Achr8P15080_001	Banana	nucleus	64.34	39.11
TraesCS1D01G024800.1	Wheat	mitochondrion	6.6	6.89

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0001522
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987
InterPro:IPR002478	PFAM:PF01472	PFAM:PF01509	PFAM:PF08068	PFAM:PF16198	PFscan:PS50890
InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136
SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	EnsemblPlantsGene:TraesCS2D01G156900	EnsemblPlants:TraesCS2D01G156900.1
InterPro:TruB_C	InterPro:Uncharacterised_CHP00451	TIGR:cd02572	SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam	:

Description

No Description!

Coordinates

chr2D:-:100190007..100191599

Molecular Weight (calculated)

58722.3 Da

IEP (calculated)

9.832

GRAVY (calculated)

-0.515

Length

530 amino acids

Sequence
(BLAST)

001: MIKPQALVPS LDTSTWPLLL KNYDRLNVRT GHYTPLPSGH SPLKRPLAEY LRYGVINLDK PSNPSSHEVV AWIKRLLRVE KTGHSGTLDP KVTGNLIVCV
101: DRATRLVKSQ QGAGKEYVCI ARFHAAVPDT ARVARALESL TGAVFQRPPL ISAVKRQLRV RTIYESKLLE HDAERHLAVF WISCEAGTYV RTLCVHLGLL
201: LGVGAHMQEL RRVRSGILGE QDNMVTMHDV MDAMWALDNH KDESYIRRVV MPLEVILTSY KRLVVKDSAV NAICYGAKLM IPGLLRFEND IDVGEEVVLM
301: TTKGEAIAIG IAEMPTAVMA TCDHGAVAKI KRVVMDRDTY PRKWGLGPVA LKKKKMIADG LLDKHGKPTD KTPAEWLRNV VLPTGGDAMI ASIAAAPEPE
401: KVKVEQQDVV PSEEVKEKKK RKTDEDDVTG STPAKKMKVE EVTEAVEGEK SEKKKKKKKD KGEPGSAVSE AVKEEKSSLS DEEKGGSEKK KKKKKSKEGG
501: DDVAPESAEV EKSEKKKEKK KKKKDAEEAQ

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.