Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G251300.1 | Wheat | nucleus | 82.7 | 84.38 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 80.2 | 69.35 |
| HORVU6Hr1G056850.1 | Barley | plastid | 75.04 | 64.71 |
| Os05t0502800-01 | Rice | nucleus | 56.91 | 50.22 |
| EES19773 | Sorghum | nucleus | 51.25 | 42.13 |
| Zm00001d038622_P001 | Maize | plastid | 50.75 | 40.61 |
| TraesCS1A01G322700.1 | Wheat | plastid | 55.91 | 38.4 |
| KRH56025 | Soybean | mitochondrion, nucleus | 20.3 | 33.42 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 33.78 | 31.77 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 28.29 | 31.72 |
| KRH25503 | Soybean | nucleus | 28.12 | 29.65 |
| CDY15463 | Canola | nucleus | 24.96 | 26.55 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 30.62 | 25.92 |
| PGSC0003DMT400047290 | Potato | nucleus | 29.45 | 23.82 |
| Solyc07g054460.2.1 | Tomato | nucleus | 30.78 | 23.78 |
| CDY51392 | Canola | nucleus | 26.46 | 22.81 |
| CDY64129 | Canola | nucleus | 26.46 | 22.46 |
| AT1G03530.1 | Thale cress | nucleus | 28.62 | 21.47 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G230600.1 | EnsemblPlantsGene:TraesCS6A01G230600 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 |
| InterPro:Transl_B-barrel_sf | PANTHER:PTHR31633 | PFAM:PF04410 | SEG:seg | SUPFAM:SSF50447 | MapMan:17.1.1.2.2.1.4 |
Description
No Description!
Coordinates
chr6A:+:435248039..435250843
Molecular Weight (calculated)
64717.1 Da
IEP (calculated)
4.335
GRAVY (calculated)
-0.862
Length
601 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSEVLVKEV LKDGRGKREE GSKDEAAVRA EMIPEVSLEK EVEGGGSKGE DQSNGEASGD AEMNSEVSAE VETENGGSKG KEESEAEEED GESGEATSSS
101: EEEEEDDDEE GEESSEASSS SDEEEQRANN HCGVGDMAAL IEEGKLMVGI NDDDDDDDDE DEEEEEASKG HVNSKHEAEI LPPVPKIEVQ LEPHHKALPV
201: GTISSIMGER VIVEGSAQHN PLNEGSILWI TESRTPLGIV EELFGPVKNP YYLVRYNSVE EVPSGISAGT AVSFVMEFAN HILNVKELYT KGYDGSGDNI
301: EDQTDDPEFS DDEKEAEYKR SLRLAKGQTD RQLDSKKHSG DKKRKQPRDA GFHKGIPRTH DVATPAHQSK HRIYRSDMAP VADNSGRSRT SVPIMTPPVT
401: LNPAMASAIQ FADQIGGCFP NPSHQFLPQQ PNVVWPGGFP PSMYPNMGIN GAALAANIMQ NILSGSNQYR QHYQNQNFGG FLNGIPMTPT QFIPQSGMPV
501: NPMPFGGPQV NPPFGPTSEL GMGQGNFGNL GYLAGDQGLP HLGLPNAQGY GRLPSSHGGG GQRPMQFNSG QFNQGSSSLS GRRPQQQGGQ HSQGRGSGGH
601: H
101: EEEEEDDDEE GEESSEASSS SDEEEQRANN HCGVGDMAAL IEEGKLMVGI NDDDDDDDDE DEEEEEASKG HVNSKHEAEI LPPVPKIEVQ LEPHHKALPV
201: GTISSIMGER VIVEGSAQHN PLNEGSILWI TESRTPLGIV EELFGPVKNP YYLVRYNSVE EVPSGISAGT AVSFVMEFAN HILNVKELYT KGYDGSGDNI
301: EDQTDDPEFS DDEKEAEYKR SLRLAKGQTD RQLDSKKHSG DKKRKQPRDA GFHKGIPRTH DVATPAHQSK HRIYRSDMAP VADNSGRSRT SVPIMTPPVT
401: LNPAMASAIQ FADQIGGCFP NPSHQFLPQQ PNVVWPGGFP PSMYPNMGIN GAALAANIMQ NILSGSNQYR QHYQNQNFGG FLNGIPMTPT QFIPQSGMPV
501: NPMPFGGPQV NPPFGPTSEL GMGQGNFGNL GYLAGDQGLP HLGLPNAQGY GRLPSSHGGG GQRPMQFNSG QFNQGSSSLS GRRPQQQGGQ HSQGRGSGGH
601: H
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.