Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400018869 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | PGSC0003DMT400018869 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g054460.2.1 | Tomato | nucleus | 65.01 | 62.08 |
| KRH56025 | Soybean | mitochondrion, nucleus | 18.3 | 37.26 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 34.99 | 36.62 |
| KRH25503 | Soybean | nucleus | 26.92 | 35.09 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 22.34 | 30.97 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 23.42 | 29.54 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 23.82 | 29.45 |
| CDY15463 | Canola | nucleus | 21.8 | 28.67 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 24.63 | 28.64 |
| Os05t0502800-01 | Rice | nucleus | 25.71 | 28.05 |
| CDY64129 | Canola | nucleus | 26.25 | 27.54 |
| CDY51392 | Canola | nucleus | 25.71 | 27.4 |
| HORVU6Hr1G056850.1 | Barley | plastid | 24.23 | 25.82 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 24.09 | 25.76 |
| AT1G03530.1 | Thale cress | nucleus | 26.51 | 24.59 |
| EES19773 | Sorghum | nucleus | 24.09 | 24.49 |
| Zm00001d038622_P001 | Maize | plastid | 24.09 | 23.83 |
| TraesCS1A01G322700.1 | Wheat | plastid | 26.38 | 22.4 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 26.51 | 21.91 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 26.92 | 21.64 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 26.78 | 21.47 |
Protein Annotations
| EntrezGene:102578573 | MapMan:17.1.1.2.2.1.4 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 |
| UniProt:M1BKH0 | PFAM:PF04410 | EnsemblPlantsGene:PGSC0003DMG400018364 | PGSC:PGSC0003DMG400018364 | EnsemblPlants:PGSC0003DMT400047290 | SUPFAM:SSF50447 |
| InterPro:Transl_B-barrel_sf | UniParc:UPI000294E24D | RefSeq:XP_006357517.1 | SEG:seg | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018364]
Coordinates
chr7:+:48636242..48641654
Molecular Weight (calculated)
80394.5 Da
IEP (calculated)
4.287
GRAVY (calculated)
-0.743
Length
743 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDFLYNSTA EEVEDDKKSQ PFSDPLSLLS IPDFDEFSLS FADSLLDFDS LSDLMSDSPM ADRNQESLEL DSVEVEFRSN DGVSEKCDIQ TEDPLSCLNQ
101: EKCVSEKCDI QTEDPLSCLN QEQSQIGVFK NGMKVEDFDC IVEEKMGRVS ISGTEDERVV DQAGVGNVSG SVVAAAVISK NEETDNKVVI SSKAEERIVN
201: DTGVNGNGST VSNSDTESES ESEASSSASS SDSDEDESSS NDEAEEKVDM EEGEIVASDV DEMVGWDDDD EDTGVKGPIR SKNEVQVLPP VPEVTATLQP
301: HHQMQPVGVV TSTIGAQVVV EGVEKHSPLC DGSILWITEN RSPLGIVDEI FGPVKNPYYI VRYNSDNEVP PGIHPGTLIS FVPEFSSHIL NDNSLYKKGY
401: DASGENDEEA SEDEFSDDEK EAEHRRMLKM KKRGITNDQK PGNKKKDKRN LKNRSQNWKH DQGVATDVQH ENGKPSVDQS PRFIPAAAAP VVQGIHQSAT
501: RQGHGQSIRP PSVPPFPHMQ NSPGLASPST GVWPNGFPYQ QPQNMGFPNT LPNMGMSWPQ QGHPQQMFQM PLPNALPFEQ QINPTLPPSF IFPGGLPNFG
601: AGPSFGPWPA FGQNVFNQSP MAMGLPGQFT PAPMNLGGQV PANGPQSGQN NNSQPNAVVP GYLNGSPNFN QGQSPSPMGL PGQFTPSPMN LGGQVPENGP
701: KSGQNNINVS PNFNRGAHSG GGRRGNHRGG GRFGGRRGRS QRN
101: EKCVSEKCDI QTEDPLSCLN QEQSQIGVFK NGMKVEDFDC IVEEKMGRVS ISGTEDERVV DQAGVGNVSG SVVAAAVISK NEETDNKVVI SSKAEERIVN
201: DTGVNGNGST VSNSDTESES ESEASSSASS SDSDEDESSS NDEAEEKVDM EEGEIVASDV DEMVGWDDDD EDTGVKGPIR SKNEVQVLPP VPEVTATLQP
301: HHQMQPVGVV TSTIGAQVVV EGVEKHSPLC DGSILWITEN RSPLGIVDEI FGPVKNPYYI VRYNSDNEVP PGIHPGTLIS FVPEFSSHIL NDNSLYKKGY
401: DASGENDEEA SEDEFSDDEK EAEHRRMLKM KKRGITNDQK PGNKKKDKRN LKNRSQNWKH DQGVATDVQH ENGKPSVDQS PRFIPAAAAP VVQGIHQSAT
501: RQGHGQSIRP PSVPPFPHMQ NSPGLASPST GVWPNGFPYQ QPQNMGFPNT LPNMGMSWPQ QGHPQQMFQM PLPNALPFEQ QINPTLPPSF IFPGGLPNFG
601: AGPSFGPWPA FGQNVFNQSP MAMGLPGQFT PAPMNLGGQV PANGPQSGQN NNSQPNAVVP GYLNGSPNFN QGQSPSPMGL PGQFTPSPMN LGGQVPENGP
701: KSGQNNINVS PNFNRGAHSG GGRRGNHRGG GRFGGRRGRS QRN
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.