Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G323100.1 | Wheat | cytosol | 88.65 | 85.98 |
| TraesCS1A01G322700.1 | Wheat | plastid | 76.53 | 78.63 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 76.2 | 74.13 |
| Os05t0502800-01 | Rice | nucleus | 44.49 | 58.74 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 37.71 | 57.56 |
| EES19773 | Sorghum | nucleus | 41.49 | 51.03 |
| Zm00001d038622_P001 | Maize | plastid | 41.16 | 49.27 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 26.36 | 37.09 |
| KRH56025 | Soybean | mitochondrion, nucleus | 14.35 | 35.34 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 19.02 | 31.9 |
| KRH25503 | Soybean | nucleus | 20.13 | 31.75 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 21.91 | 27.75 |
| CDY15463 | Canola | nucleus | 17.24 | 27.43 |
| Solyc07g054460.2.1 | Tomato | nucleus | 23.14 | 26.74 |
| PGSC0003DMT400047290 | Potato | nucleus | 21.91 | 26.51 |
| CDY64129 | Canola | nucleus | 20.58 | 26.13 |
| AT1G03530.1 | Thale cress | nucleus | 21.91 | 24.59 |
| CDY51392 | Canola | nucleus | 18.91 | 24.39 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G335000.1 | EnsemblPlantsGene:TraesCS1B01G335000 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 |
| InterPro:Transl_B-barrel_sf | PFAM:PF04410 | SEG:seg | SUPFAM:SSF50447 | MapMan:17.1.1.2.2.1.4 | : |
Description
No Description!
Coordinates
chr1B:-:562374671..562378608
Molecular Weight (calculated)
93984.5 Da
IEP (calculated)
4.342
GRAVY (calculated)
-0.643
Length
899 amino acids
Sequence
(BLAST)
(BLAST)
001: MARHPRPPSP XXXXXXXXXX XXAAAVAFDP VEEWLLDDFD FDQAMASELP KSFGLGEAAA AGPCGIDFAS VSGGGGLGLD QIVKEGEDAP PGVLLEVKKE
101: AVMLLGGGLG GEPGPDQPPV LGIGDFVAEG DGLGAAIDAE MCTVAAGDAD ASTVAAVHSA ASTVAPVDAE MSAVAAVAAD NITMSAVDSD TSVVAAVHAE
201: TITRASVDAE MSTAGALHSD TSTVAAVDAD TSTNASVDAE MSSGALVNEE VERGGGKEEE EDNKDKESES SEDEELSEAS SSSDDDEEEP AKNDEESSEA
301: SSSSDEEVLV AKKHSGPSDM EALLEEGELM VGLEDEDDDE TPKGPIKSKH EVEVFPPVPK IEVQLEPHHK ALPVGTITAI MGERVIVEGS VEHSPLTEGS
401: ILWITESRTP LGIVDEIFGP VKNPYYLVRY NSAEEVPAGI SAGTTVCFVA EFADHILNMK ELYAKGYDES ADHDEEADEP EFSDDEQEAE YKRSLRLVKR
501: QTDRPHDSKK PSGDKKRAQT RGAGFRNDMP PRTHDTPTSG HQSQRRFHRS DMADSVTHQS GQQNYLMSTP RDMPPRIHDA STPDRRPQPR FHRSDMATAV
601: ADSATRQTGP QNFPMSAPTM LPSISMNHAM PSPVQLANQM GSCFINPQQF SQQPNMVWPG GLPPPGQPNM GVDGAALAAN IMQNILMGAN QFQQYLQNQN
701: FGGFPNGMPM AQQQFMPGST MSANMMPFGG PPVNHPFGQA SQFPMGQGNF GQFPHMTGNQ APPAGFPNTQ GFGRFPSQHE DGDQPPGNAN MQGDGRLPSP
801: HGDGGQPPMQ FNSLPSPHGD GGQPPMQFNS LPSPHGDGGQ PPMQFNSLPS PRGDGGQPPM KFNSGQFNQG NSSFRGRRPQ QRGGRHSPGR GGGGGRHRK
101: AVMLLGGGLG GEPGPDQPPV LGIGDFVAEG DGLGAAIDAE MCTVAAGDAD ASTVAAVHSA ASTVAPVDAE MSAVAAVAAD NITMSAVDSD TSVVAAVHAE
201: TITRASVDAE MSTAGALHSD TSTVAAVDAD TSTNASVDAE MSSGALVNEE VERGGGKEEE EDNKDKESES SEDEELSEAS SSSDDDEEEP AKNDEESSEA
301: SSSSDEEVLV AKKHSGPSDM EALLEEGELM VGLEDEDDDE TPKGPIKSKH EVEVFPPVPK IEVQLEPHHK ALPVGTITAI MGERVIVEGS VEHSPLTEGS
401: ILWITESRTP LGIVDEIFGP VKNPYYLVRY NSAEEVPAGI SAGTTVCFVA EFADHILNMK ELYAKGYDES ADHDEEADEP EFSDDEQEAE YKRSLRLVKR
501: QTDRPHDSKK PSGDKKRAQT RGAGFRNDMP PRTHDTPTSG HQSQRRFHRS DMADSVTHQS GQQNYLMSTP RDMPPRIHDA STPDRRPQPR FHRSDMATAV
601: ADSATRQTGP QNFPMSAPTM LPSISMNHAM PSPVQLANQM GSCFINPQQF SQQPNMVWPG GLPPPGQPNM GVDGAALAAN IMQNILMGAN QFQQYLQNQN
701: FGGFPNGMPM AQQQFMPGST MSANMMPFGG PPVNHPFGQA SQFPMGQGNF GQFPHMTGNQ APPAGFPNTQ GFGRFPSQHE DGDQPPGNAN MQGDGRLPSP
801: HGDGGQPPMQ FNSLPSPHGD GGQPPMQFNS LPSPHGDGGQ PPMQFNSLPS PRGDGGQPPM KFNSGQFNQG NSSFRGRRPQ QRGGRHSPGR GGGGGRHRK
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.