Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr8P15080_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | GSMUA_Achr11P... | AT3G57150.1 | 17712600 |
| AT1G03530.1 | GSMUA_Achr11P... | AT3G57150.1 | 17712600 |
| AT1G03530.1 | GSMUA_Achr8P15080_001 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G230600.1 | Wheat | nucleus | 31.77 | 33.78 |
| KRH56025 | Soybean | mitochondrion, nucleus | 19.09 | 33.42 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 30.2 | 32.77 |
| Os05t0502800-01 | Rice | nucleus | 34.74 | 32.6 |
| KRH25503 | Soybean | nucleus | 28.01 | 31.4 |
| HORVU6Hr1G056850.1 | Barley | plastid | 33.18 | 30.42 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 24.73 | 29.48 |
| EES19773 | Sorghum | nucleus | 33.02 | 28.86 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 31.3 | 28.78 |
| Zm00001d038622_P001 | Maize | plastid | 32.71 | 27.83 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 30.05 | 27.04 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 37.09 | 26.36 |
| TraesCS1A01G322700.1 | Wheat | plastid | 35.37 | 25.83 |
| CDY15463 | Canola | nucleus | 22.07 | 24.96 |
| PGSC0003DMT400047290 | Potato | nucleus | 28.64 | 24.63 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 35.52 | 24.49 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 35.21 | 24.35 |
| CDY64129 | Canola | nucleus | 25.82 | 23.31 |
| CDY51392 | Canola | nucleus | 25.04 | 22.96 |
| Solyc07g054460.2.1 | Tomato | nucleus | 27.7 | 22.75 |
| AT1G03530.1 | Thale cress | nucleus | 27.7 | 22.1 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P12240_001 | EnsemblPlants:GSMUA_Achr9T12240_001 | EnsemblPlantsGene:GSMUA_Achr9G12240_001 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 |
| InterPro:IPR038664 | InterPro:Transl_B-barrel_sf | PFAM:PF04410 | SEG:seg | SUPFAM:SSF50447 | UniParc:UPI0002960995 |
| UniProt:M0TZN3 | MapMan:17.1.1.2.2.1.4 | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G12240_001]
Coordinates
chr9:-:7984801..7988794
Molecular Weight (calculated)
70045.9 Da
IEP (calculated)
4.324
GRAVY (calculated)
-0.719
Length
639 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRPWSPPLS HREEPPSPLN FDDLDSFLPD FDPVKEWLID PDQFFMLGDE AKVPDPTGLD PNKVESAGPL DTDDFATKRS YPGAKEEILC SSIDERMQNV
101: SLVEASDGNA NNVTVLEGAA SEATAKIDAG EANVAMVSSG AGGSKERDVA NGCTALTKAN GANEAHAASG LVKDEESSGT ESDGSEAEDD DTDRSDSSSS
201: SSSEEEDDGD DDDDESDSNS NRERGMDAEG EIEEGEIRDT DREEMFIGSE EEEEVVKGPI KSKNEVENLP PVPKIEVLLE PHHQTLPVGV ISAMLDNKVI
301: VEGSEKHNPL NEGSILWITE MRLPLGFVDE IFGPVKNPFY VVRYNSDMEV PAGISVGTAV SFVVEFATCI INHKELCRKA YDASGENDEE LNEEVEFSDD
401: EKETEYKKSL RLSKRENNDR RKGNQESFVN KRKFRGASIH KDIPPAFDHV PDVVDRPLTM IPLAAQMSSS LGLLPQQLQQ QLNALWLNGL PHQQQQHIGL
501: QGGFPVNMLP GQQLVNQAYN QLHQNQFFNS FPTGMPFQQQ FVPSIQAPAN IPWLGGLMRP SMAAPPGSMW SGDLGQETSG NMQIQGAPIS SNEHNFGRPP
601: LANAPRTQRP PRNLGRGRTS FRGKKPHHRG GYHSYGRGS
101: SLVEASDGNA NNVTVLEGAA SEATAKIDAG EANVAMVSSG AGGSKERDVA NGCTALTKAN GANEAHAASG LVKDEESSGT ESDGSEAEDD DTDRSDSSSS
201: SSSEEEDDGD DDDDESDSNS NRERGMDAEG EIEEGEIRDT DREEMFIGSE EEEEVVKGPI KSKNEVENLP PVPKIEVLLE PHHQTLPVGV ISAMLDNKVI
301: VEGSEKHNPL NEGSILWITE MRLPLGFVDE IFGPVKNPFY VVRYNSDMEV PAGISVGTAV SFVVEFATCI INHKELCRKA YDASGENDEE LNEEVEFSDD
401: EKETEYKKSL RLSKRENNDR RKGNQESFVN KRKFRGASIH KDIPPAFDHV PDVVDRPLTM IPLAAQMSSS LGLLPQQLQQ QLNALWLNGL PHQQQQHIGL
501: QGGFPVNMLP GQQLVNQAYN QLHQNQFFNS FPTGMPFQQQ FVPSIQAPAN IPWLGGLMRP SMAAPPGSMW SGDLGQETSG NMQIQGAPIS SNEHNFGRPP
601: LANAPRTQRP PRNLGRGRTS FRGKKPHHRG GYHSYGRGS
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.