Factsheet for GSMUA_Achr11P00660_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P00860_001
GSMUA_Achr9P12240_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	GSMUA_Achr5P00860_001	AT1G03530.1	17712600
AT3G57150.1	GSMUA_Achr9P12240_001	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0576300-01	Rice	nucleus, plastid	25.64	65.33
TraesCS2D01G156900.1	Wheat	cytosol	66.47	63.58
GSMUA_Achr11P...	Banana	nucleus	78.3	62.32
VIT_08s0007g00190.t01	Wine grape	cytosol	71.79	62.12
Os11t0598700-00	Rice	mitochondrion	24.65	61.88
Bra003270.1-P	Field mustard	cytosol	66.67	61.79
AT3G57150.1	Thale cress	cytosol	68.84	61.77
EES02707	Sorghum	cytosol	71.01	61.64
CDX67680	Canola	cytosol	66.47	61.61
PGSC0003DMT400018869	Potato	cytosol	69.63	61.61
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	70.22	61.49
TraesCS2D01G157000.1	Wheat	nucleus	67.26	61.33
EER99769	Sorghum	cytosol, nucleus, plastid	70.61	61.09
CDY33839	Canola	cytosol	62.72	61.04
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	69.82	60.72
Zm00001d008327_P001	Maize	plasma membrane	69.82	60.72
KRH10580	Soybean	nucleus	70.22	60.44
CDY50671	Canola	cytosol	62.13	59.89
KRH43875	Soybean	nucleus	68.44	59.83
Os03t0370500-02	Rice	nucleus	69.63	59.73
CDY25279	Canola	cytosol	61.93	59.7
Os07t0636000-01	Rice	nucleus	70.41	59.5
Solyc02g081810.2.1	Tomato	nucleus	69.43	58.96
TraesCS2B01G177000.1	Wheat	nucleus	69.82	58.32
TraesCS2A01G151800.1	Wheat	cytosol	69.63	58.06
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	69.03	57.85
Bra033149.1-P	Field mustard	cytosol	61.93	57.4
HORVU2Hr1G027370.1	Barley	cytosol	61.93	48.91
HORVU2Hr1G027400.5	Barley	plastid	62.33	46.27
GSMUA_Achr8P15080_001	Banana	nucleus	75.54	43.92
GSMUA_Achr6P06680_001	Banana	mitochondrion	7.1	8.51

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ncoils:Coil	GO:GO:0001522	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr11G00660_001
EnsemblPlants:GSMUA_Achr11P00660_001	EnsemblPlants:GSMUA_Achr11T00660_001	InterPro:IPR002478	UniProt:M0RN97	PFAM:PF01472	PFAM:PF01509
PFAM:PF16198	PFscan:PS50890	PANTHER:PTHR23127	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N
InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451
InterPro:TruB_C	UniParc:UPI000296C638	InterPro:Uncharacterised_CHP00451	SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam	:

Description

Predicted protein (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G00660_001]

Coordinates

chr11:+:410336..412646

Molecular Weight (calculated)

56667.2 Da

IEP (calculated)

9.738

GRAVY (calculated)

-0.699

Length

507 amino acids

Sequence
(BLAST)

001: MTSPPPPGEI ASSHPTTTEK KKTKSKEDKR SAANGGVDQS FPLSAGGGDQ EKDYFIKPQS FTPAVDTSDW PILLKNYDRL NRIFRAEKTG HSGTLDPKVT
101: GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALETLTGA VFQRPPLISA VKRELRIRTI YESKLLEYDP DRHLVVFWIS CQAGTYVRTL
201: CVHLGLILGV GGHMQELRRV RSGILGEKEN MVTMHDVLDA QWTYDNFQDE SYLRRVVMPL EVLLTSYKRL VIKDSAVNAI CYGAKLMIPG LLRFENDIEV
301: GEEVVLMTTK GEAIALGIAE MTTAVMATCD HGSVAKIKRV VMDRDTYPRK WGLGPRALMK KKMITEGLLD KHGKPNEKTP SEWLRNVVLP TGGDSMVASL
401: AAAPEPAKKK KKKKDKEREE EELADEENIA NERKKEKKHK SKAGSSDEEK LTEDKEKQKK KKKNKKKKNE EDKLGEETGS LTGNNEEEEK SEKLKKKKNR
501: NAEETAA

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.