Factsheet for GSMUA_Achr5P00860_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr8P15080_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03530.1	GSMUA_Achr11P...	AT3G57150.1	17712600
AT1G03530.1	GSMUA_Achr11P...	AT3G57150.1	17712600
AT1G03530.1	GSMUA_Achr8P15080_001	AT3G57150.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56025	Soybean	mitochondrion, nucleus	21.83	32.05
TraesCS6B01G251300.1	Wheat	nucleus	32.09	29.2
TraesCS6A01G230600.1	Wheat	nucleus	31.72	28.29
Os05t0502800-01	Rice	nucleus	35.07	27.61
KRH25503	Soybean	nucleus	28.36	26.67
HORVU6Hr1G056850.1	Barley	plastid	32.28	24.82
CDY15463	Canola	nucleus	26.12	24.78
GSMUA_Achr9P12240_001	Banana	cytosol	29.48	24.73
TraesCS6D01G204400.1	Wheat	mitochondrion, nucleus	31.53	24.32
EES19773	Sorghum	nucleus	31.9	23.39
VIT_12s0059g01970.t01	Wine grape	nucleus	30.22	22.82
PGSC0003DMT400047290	Potato	nucleus	30.97	22.34
Zm00001d038622_P001	Maize	plastid	31.16	22.24
Solyc07g054460.2.1	Tomato	nucleus	30.78	21.21
CDY64129	Canola	nucleus	27.05	20.48
CDY51392	Canola	nucleus	26.49	20.37
TraesCS1A01G322700.1	Wheat	plastid	32.46	19.89
AT1G03530.1	Thale cress	nucleus	29.29	19.6
TraesCS1B01G335000.1	Wheat	cytosol, mitochondrion	31.9	19.02
HORVU1Hr1G065830.1	Barley	extracellular, nucleus, plastid	31.9	18.51
TraesCS1D01G323100.1	Wheat	cytosol	31.9	18.45

Protein Annotations

EnsemblPlants:GSMUA_Achr5P00860_001	EnsemblPlants:GSMUA_Achr5T00860_001	EnsemblPlantsGene:GSMUA_Achr5G00860_001	Gene3D:2.40.10.230	GO:GO:0001522	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0042254	InterPro:Gar1/Naf1_Cbf5-bd_sf	InterPro:H/ACA_rnp_Gar1/Naf1
InterPro:IPR038664	InterPro:Transl_B-barrel_sf	PANTHER:PTHR31633	PFAM:PF04410	SEG:seg	SUPFAM:SSF50447
UniParc:UPI000296EA69	UniProt:M0SUL5	MapMan:17.1.1.2.2.1.4	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G00860_001]

Coordinates

chr5:-:501869..504566

Molecular Weight (calculated)

58526.7 Da

IEP (calculated)

4.996

GRAVY (calculated)

-0.574

Length

536 amino acids

Sequence
(BLAST)

001: MEKVSLIGCS DHLLSDPSAP VADGEGGRKE FGDGVTNGDS EREELSSEES DSSSSTSSEE EEEEDGNSDG DGGQGPEEVL AGSVDEEQVV RGPIKSKNEL
101: EVLPSVPRVE ITLKPHHHTI PVGMISSVLG NRVIVEGSVN HNPLNEGSIL WITETRTLLG IIDEIFGPVK KPYYVVRYNS ENDVPTGITD GTAVSFVIEF
201: AKYVLDKNIC NKGYDASGEN DEEITNEVEF SDDEKEVEYR RSMRQTKRGP DDRKHVKLKN DTRKKKTNFK GARVQKGMVS PIPDDLEAPK QPIPGVRSPF
301: LAPSRACKSD FGKLSYLQSA YTCENASPML PSIAQADTFV VTSPSHQLTQ QPNPSLGHGV SYLQQPNAFL ACGMPMPFQQ QQNAFWPLAT PTQQQMNAIV
401: THGMSLQQQQ VAAMAGFQMN CLPSQQLGTG AYLRQHQIQG FSDNSNRMPS QQQIFPMLGI PWIGGSLNFS SGLMPPVPVP QAGQASLVHT EQGVSDQLFP
501: ATDQGGMLFN PGSSSIHGRM PLQRGGRHSF RQSMRR

Best Arabidopsis Sequence Match ( AT1G03530.1 )
(BLAST)

001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G

Arabidopsis Description

ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.