Factsheet for GSMUA_Achr11P15870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P00860_001
GSMUA_Achr9P12240_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	GSMUA_Achr5P00860_001	AT1G03530.1	17712600
AT3G57150.1	GSMUA_Achr9P12240_001	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	62.32	78.3
TraesCS2D01G156900.1	Wheat	cytosol	61.22	73.58
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	64.99	71.5
Os03t0370500-02	Rice	nucleus	66.25	71.4
TraesCS2D01G157000.1	Wheat	nucleus	62.32	71.4
Os04t0576300-01	Rice	nucleus, plastid	22.29	71.36
EER99769	Sorghum	cytosol, nucleus, plastid	65.62	71.33
EES02707	Sorghum	cytosol	65.15	71.06
Zm00001d008327_P001	Maize	plasma membrane	64.68	70.67
Bra003270.1-P	Field mustard	cytosol	60.28	70.2
CDX67680	Canola	cytosol	60.13	70.02
Os07t0636000-01	Rice	nucleus	65.93	70.0
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	64.05	69.98
Os11t0598700-00	Rice	mitochondrion	22.14	69.8
CDY33839	Canola	cytosol	56.99	69.67
VIT_08s0007g00190.t01	Wine grape	cytosol	64.05	69.62
CDY50671	Canola	cytosol	57.46	69.58
CDY25279	Canola	cytosol	56.99	69.01
AT3G57150.1	Thale cress	cytosol	61.07	68.85
PGSC0003DMT400018869	Potato	cytosol	61.7	68.59
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	64.52	67.93
TraesCS2B01G177000.1	Wheat	nucleus	64.52	67.71
Solyc02g081810.2.1	Tomato	nucleus	63.42	67.67
TraesCS2A01G151800.1	Wheat	cytosol	64.36	67.43
Bra033149.1-P	Field mustard	cytosol	57.61	67.09
KRH43875	Soybean	nucleus	60.28	66.21
KRH10580	Soybean	nucleus	61.07	66.04
HORVU2Hr1G027370.1	Barley	cytosol	57.3	56.85
HORVU2Hr1G027400.5	Barley	plastid	57.77	53.88
GSMUA_Achr8P15080_001	Banana	nucleus	63.27	46.22
GSMUA_Achr6P06680_001	Banana	mitochondrion	5.34	8.04

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0001522
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr11G15870_001	EnsemblPlants:GSMUA_Achr11P15870_001	EnsemblPlants:GSMUA_Achr11T15870_001	InterPro:IPR002478	UniProt:M0RSL7	PFAM:PF01472
PFAM:PF01509	PFAM:PF08068	PFAM:PF16198	PFscan:PS50890	InterPro:PUA	InterPro:PUA-like_sf
InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697
TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	InterPro:TruB_C	UniParc:UPI00029506A5	InterPro:Uncharacterised_CHP00451	SEG:seg
InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G15870_001]

Coordinates

chr11:-:17572886..17575153

Molecular Weight (calculated)

70843.4 Da

IEP (calculated)

9.843

GRAVY (calculated)

-0.748

Length

637 amino acids

Sequence
(BLAST)

001: MSSPPPPADI ASPSPTTDRK KKKKKKSKDE NILPSPSAGG PGEDQDKDYF IKPQSLTPAV DTSSWPILLK NYDRLNVRTG HYTPLPAGHS PLKRPLPEYL
101: RYGILNLDKP SNPSSHEVVA WIKRILRAEK TGHSGTLDPK VTGNLIVCID RATRLVKSQQ GAGKEYVCVA RLHSAVPDVA KVARALETLT GAVFQRPPLI
201: SAVKRELRIR TIYESKLLEY DPDRHLVVFW ISCQAGTYVR TLCVHLGLIL GVGGHMQELR RVRSGILGEK DNMVTMHDVL DAQWMHDNFK DESYLRRVVM
301: PLEVLLTSYK RLVVKDSAVN AICYGAKLMI PGLLRFENDI EVGEEVVLMT TKGEAIALGI AEMTTAVMAT CDHGSVARIK RVVMDRDTYP RKWGLGPRAL
401: AKKKMIAGGL LDKHGKPNEK TPAEWLRNLV LPTGGDSMVA SLAAAPESVA PMDEVAAEEV KVDKKKKKKH KDKDGGCDDE DGGEGRKRKL EDAREVPAAK
501: KVKIEKPQDV ILDAESKKLE DVEEVEQAQD EEKSEKKKKK KKKVKEGEEA ELADGEKVVE KEKKKKKSSK NKSEAGSSDE EQLTEEKKKK KKRSKEDNNG
601: EETELPRSLT GDTEEVKTSK KKEKKKKKNR DAEGTTA

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.