Factsheet for Os07t0636000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 18203134
nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0502800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	Os05t0502800-01	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G156900.1	Wheat	cytosol	78.17	88.49
EER99769	Sorghum	cytosol, nucleus, plastid	84.83	86.86
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	82.33	84.73
TraesCS2D01G157000.1	Wheat	nucleus	78.33	84.53
Os03t0370500-02	Rice	nucleus	82.83	84.09
TraesCS2B01G177000.1	Wheat	nucleus	83.33	82.37
TraesCS2A01G151800.1	Wheat	cytosol	83.0	81.91
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	82.5	81.82
Os04t0576300-01	Rice	nucleus, plastid	26.67	80.4
Os11t0598700-00	Rice	mitochondrion	26.33	78.22
CDY25279	Canola	cytosol	63.5	72.43
Bra003270.1-P	Field mustard	cytosol	65.33	71.66
CDY50671	Canola	cytosol	62.67	71.48
CDY33839	Canola	cytosol	62.0	71.4
CDX67680	Canola	cytosol	65.0	71.3
AT3G57150.1	Thale cress	cytosol	66.5	70.62
GSMUA_Achr11P...	Banana	cytosol	59.5	70.41
PGSC0003DMT400018869	Potato	cytosol	67.17	70.33
Bra033149.1-P	Field mustard	cytosol	63.33	69.47
VIT_08s0007g00190.t01	Wine grape	cytosol	67.5	69.11
Solyc02g081810.2.1	Tomato	nucleus	67.5	67.84
KRH10580	Soybean	nucleus	66.5	67.74
KRH43875	Soybean	nucleus	65.33	67.59
GSMUA_Achr11P...	Banana	nucleus	70.0	65.93
HORVU2Hr1G027370.1	Barley	cytosol	70.0	65.42
HORVU2Hr1G027400.5	Barley	plastid	70.0	61.49
GSMUA_Achr8P15080_001	Banana	nucleus	60.33	41.51

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	EntrezGene:4344029	EMBL:AK102460	ProteinID:BAC16386.1
ProteinID:BAF22305.1	ProteinID:BAT02818.1	ncoils:Coil	InterPro:Dyskerin-like	ProteinID:EAZ40797.1	GO:GO:0000495
GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987
GO:GO:0031118	GO:GO:0031120	GO:GO:0031429	GO:GO:1990481	InterPro:IPR002478	EnsemblPlantsGene:Os07g0636000
EnsemblPlants:Os07t0636000-01	PFAM:PF01472	PFAM:PF01509	PFAM:PF08068	PFAM:PF16198	PFscan:PS50890
PANTHER:PTHR23127	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	UniProt:Q8H5T5
SMART:SM00359	SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451
InterPro:TruB_C	UniParc:UPI00000AD539	InterPro:Uncharacterised_CHP00451	RefSeq:XP_015647556.1	SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam

Description

Similar to H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (Nucleolar protein NAP57 homolog) (Nopp-140 associated protein of 57 kDa homolog) (AtNAP57). (Os07t0636000-01)

Coordinates

chr7:-:26406702..26408800

Molecular Weight (calculated)

65870.3 Da

IEP (calculated)

9.701

GRAVY (calculated)

-0.581

Length

600 amino acids

Sequence
(BLAST)

001: MSSPPPAAAA SPSSELTKSK KKKIKSKDAA TAAAVDPPSL AEAEAKTDGY LIKPQSLVPS LDTSTWPLLL KNYDRLNVRT GHYTPLPSGH SPLKRPIAEY
101: LRYGVINLDK PSNPSSHEVV AWIKRLLRVD KTGHSGTLDP KVTGNLIVCV DRATRLVKSQ QGAGKEYVCV ARFHAAVPDT ARVARALEAL TGAVFQRPPL
201: ISAVKRQLRV RTIYESKLLE HDADRHLAVF WISCEAGTYV RTLCVHLGLL LGVGAHMQEL RRVRSGILGE QDNMVTMHDV MDARWAMDNY NDETYLRRIV
301: MPLEVLLTSY KRLVVKDSAV NAICYGAKLM IPGLLRFEND IDVGEEVVLM TTKGEAIAIG IAEMTTAVMA TCDHGAVAKI KRVVMDRDTY PRKWGLGPVA
401: LKKKKMVAEG LLDKHGKPNE KTPAEWIRNV ALPTGGDAMI ASIAAAPEEA KVKAEQDVVA TEEVKEKKKK KKHKDEEDAA DEGRKRKIED DDASASVPVK
501: KIKVEESAEE VEGEKSEKKK KKKKDKGEQG SGDAEVKEEK ADISDGEKVG SEKKKKKKKS KEGGDVVDPE SAANGDGVEA EKSEKKKEKK KKKSRDTEEA

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.