Factsheet for TraesCS2D01G157000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G322700.1
TraesCS1B01G335000.1
TraesCS1D01G323100.1
TraesCS6A01G230600.1
TraesCS6B01G251300.1
TraesCS6D01G204400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	TraesCS1A01G322700.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS1B01G335000.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS1D01G323100.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS6A01G230600.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS6B01G251300.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS6D01G204400.1	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G156900.1	Wheat	cytosol	92.27	96.79
TraesCS2B01G177000.1	Wheat	nucleus	98.92	90.61
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	98.56	90.58
TraesCS2A01G151800.1	Wheat	cytosol	98.56	90.13
EER99769	Sorghum	cytosol, nucleus, plastid	84.53	80.2
Os04t0576300-01	Rice	nucleus, plastid	28.6	79.9
Os07t0636000-01	Rice	nucleus	84.53	78.33
Os11t0598700-00	Rice	mitochondrion	28.06	77.23
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	80.94	77.19
Os03t0370500-02	Rice	nucleus	81.3	76.48
CDY25279	Canola	cytosol	68.35	72.24
CDY50671	Canola	cytosol	67.99	71.86
Bra003270.1-P	Field mustard	cytosol	70.5	71.66
CDX67680	Canola	cytosol	70.32	71.48
CDY33839	Canola	cytosol	66.91	71.4
Bra033149.1-P	Field mustard	cytosol	67.81	68.92
AT3G57150.1	Thale cress	cytosol	69.6	68.5
VIT_08s0007g00190.t01	Wine grape	cytosol	71.76	68.09
PGSC0003DMT400018869	Potato	cytosol	70.14	68.06
KRH43875	Soybean	nucleus	70.32	67.41
GSMUA_Achr11P...	Banana	cytosol	61.33	67.26
KRH10580	Soybean	nucleus	70.14	66.21
Solyc02g081810.2.1	Tomato	nucleus	70.14	65.33
HORVU2Hr1G027370.1	Barley	cytosol	75.0	64.95
GSMUA_Achr11P...	Banana	nucleus	71.4	62.32
HORVU2Hr1G027400.5	Barley	plastid	73.92	60.18
GSMUA_Achr8P15080_001	Banana	nucleus	62.05	39.56
TraesCS1D01G024800.1	Wheat	mitochondrion	6.29	6.89

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0001522
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987
InterPro:IPR002478	PFAM:PF01472	PFAM:PF01509	PFAM:PF08068	PFAM:PF16198	PFscan:PS50890
InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136
SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	EnsemblPlantsGene:TraesCS2D01G157000	EnsemblPlants:TraesCS2D01G157000.1
InterPro:TruB_C	InterPro:Uncharacterised_CHP00451	TIGR:cd02572	SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam	:

Description

No Description!

Coordinates

chr2D:+:100311372..100313042

Molecular Weight (calculated)

61610.7 Da

IEP (calculated)

9.842

GRAVY (calculated)

-0.576

Length

556 amino acids

Sequence
(BLAST)

001: MIKPQALVPS LDTSTWPLLL KNYDRLNVRT GHYTPLPSGH SPLKRPLAEY LRYGVINLDK PSNPSSHEVV AWIKRLLRVE KTGHSGTLDP KVTGNLIVCV
101: DRATRLVKSQ QGAGKEYVCI ARFHAAVPDT ARVARALESL TGAVFQRPPL ISAVKRQLRV RTIYESKLLE HDAERHLAVF WISCEAGTYV RTLCVHLGLL
201: LGVGAHMQEL RRVRSGILGE QDNMVTMHDV MDAMWALDNH KDESYIRRVV MPLEVILTSY KRLVVKDSAV NAICYGAKLM IPGLLRFEND IDVGEEVVLM
301: TTKGEAIAIG IAEMPTAVMA TCDHGAVAKI KRVVMDRDTY PRKWGLGPVA LKKKKMIAEG LLDKHGKPTE KTPAEWLRNV VLPTGGDAMI ASLAAAPEPE
401: KVKVEQQDVV PSEQVKEKKK RKTDEDDVTA STPAKKMKVE EVTEAVEGEK SEKKKKKKKD KGEPGSAVSE AVKEEKSSLS DEEKGASEKK KKKKSKEGGD
501: DVAPESAEVE KSEKKKDKKK KSKEGGDDVA TESEVEKSEK KKEKKKKKKD AEEAAQ

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.