Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G251300.1 | Wheat | nucleus | 68.78 | 81.15 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 69.35 | 80.2 |
| HORVU6Hr1G056850.1 | Barley | plastid | 77.12 | 76.9 |
| Os05t0502800-01 | Rice | nucleus | 51.94 | 53.01 |
| EES19773 | Sorghum | nucleus | 45.61 | 43.37 |
| Zm00001d038622_P001 | Maize | plastid | 44.17 | 40.88 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 50.07 | 37.54 |
| KRH56025 | Soybean | mitochondrion, nucleus | 17.27 | 32.88 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 24.32 | 31.53 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 28.78 | 31.3 |
| KRH25503 | Soybean | nucleus | 23.45 | 28.6 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 26.47 | 25.92 |
| CDY15463 | Canola | nucleus | 20.0 | 24.6 |
| Solyc07g054460.2.1 | Tomato | nucleus | 27.34 | 24.42 |
| PGSC0003DMT400047290 | Potato | nucleus | 25.76 | 24.09 |
| CDY64129 | Canola | nucleus | 24.17 | 23.73 |
| CDY51392 | Canola | nucleus | 22.73 | 22.67 |
| AT1G03530.1 | Thale cress | nucleus | 25.47 | 22.1 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G204400.1 | EnsemblPlantsGene:TraesCS6D01G204400 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 |
| InterPro:Transl_B-barrel_sf | PANTHER:PTHR31633 | PFAM:PF04410 | SEG:seg | SUPFAM:SSF50447 | MapMan:17.1.1.2.2.1.4 |
Description
No Description!
Coordinates
chr6D:-:289628575..289631579
Molecular Weight (calculated)
74707.6 Da
IEP (calculated)
4.879
GRAVY (calculated)
-0.778
Length
695 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLGSKPSPL LPGRRGESRN KTLAQNPPHR HPAVLNPPLR LCLEPHPEPL SHSVAPSASP LALLSSRRRG ALATHSLRQA PPVPPSRSPL PARTLAAIYT
101: EMDSEVLVKE VLKDGGGKGE EGSKDEAAVR AEMIPAVSLK EEVEGGGSKG EDQSNGEASV DAEMNSEVSA EVEMENGGSK GKEESEAEEE DGESGEATSS
201: SEEDDEEEEE ESSEASSSSD EEEQRANNHC GVGDMAALIE EGKLMVGIND DDDDEEEEEA SKGHINSKHE AEILPPVPKI EVQLEPHHKA LPVGTISSIM
301: GERVIVEGSV QHNPLNEGSI LWITESRTPL GIVEELFGPV KNPYYLVRYN SVEEVPSGIS AGTAVSFVME FANHILNVKE LYTKGYDGSG DNIEDQTDDP
401: EFSDDEKEAE YKRSLRLAKG QTDRQLDSKK HSGDRKRKQP RDAGFHKGIP RTHDVATPAH QSKHRIYRSD MAPVADNSAR SHTSVPIMTP PVTVNPAMAS
501: AIQFADQKGG CFPNPSQQFL PQQPNVVWPG GFPPSMYPNM GINGAALAAN IIQNILSGSN QYQQHYQNQN FGGFLNGIPM TPTQFIPQSR MPVNPMPFGG
601: PQVNPPFGPT SELGMGQGNF GNLGYLAGDQ GLPHPGLPNA QGYGRLPSSH GGGAQRPMQF NSGQSNQGSS SFSGRRPQQQ GGQHSQGRGS GGHHK
101: EMDSEVLVKE VLKDGGGKGE EGSKDEAAVR AEMIPAVSLK EEVEGGGSKG EDQSNGEASV DAEMNSEVSA EVEMENGGSK GKEESEAEEE DGESGEATSS
201: SEEDDEEEEE ESSEASSSSD EEEQRANNHC GVGDMAALIE EGKLMVGIND DDDDEEEEEA SKGHINSKHE AEILPPVPKI EVQLEPHHKA LPVGTISSIM
301: GERVIVEGSV QHNPLNEGSI LWITESRTPL GIVEELFGPV KNPYYLVRYN SVEEVPSGIS AGTAVSFVME FANHILNVKE LYTKGYDGSG DNIEDQTDDP
401: EFSDDEKEAE YKRSLRLAKG QTDRQLDSKK HSGDRKRKQP RDAGFHKGIP RTHDVATPAH QSKHRIYRSD MAPVADNSAR SHTSVPIMTP PVTVNPAMAS
501: AIQFADQKGG CFPNPSQQFL PQQPNVVWPG GFPPSMYPNM GINGAALAAN IIQNILSGSN QYQQHYQNQN FGGFLNGIPM TPTQFIPQSR MPVNPMPFGG
601: PQVNPPFGPT SELGMGQGNF GNLGYLAGDQ GLPHPGLPNA QGYGRLPSSH GGGAQRPMQF NSGQSNQGSS SFSGRRPQQQ GGQHSQGRGS GGHHK
001: MKRIKPPTVP AGVVNMVQYL VVTNKGDHKP LNVGTMLLIT ETKVPLGRVD GYFFGSVTNP DYIVKVEDSE MQIPEVRQGG PSGSFGVDLS YPNQQQLGSE
101: MDFNPQTQPT MQSQLFNAGP YSYRESRESR AIVHAPRSTI YEANKKPYSS FSRNAKEDDR NDGEAQGTMT NDVHRSEAIQ PTLLPGPNQT VGDDDQHCLE
101: MDFNPQTQPT MQSQLFNAGP YSYRESRESR AIVHAPRSTI YEANKKPYSS FSRNAKEDDR NDGEAQGTMT NDVHRSEAIQ PTLLPGPNQT VGDDDQHCLE
Arabidopsis Description
Uncharacterized protein AT4g03380 [Source:UniProtKB/TrEMBL;Acc:Q9ZQZ3]
SUBAcon: [extracellular,cytosol]
SUBAcon: [extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.