CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10580
KRH43875

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03530.1	KRH10580	AT3G57150.1	17712600
AT1G03530.1	KRH43875	AT3G57150.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25503	Soybean	nucleus	81.92	52.46
VIT_12s0059g01970.t01	Wine grape	nucleus	42.74	21.97
GSMUA_Achr5P00860_001	Banana	nucleus	32.05	21.83
TraesCS6B01G251300.1	Wheat	nucleus	33.15	20.54
TraesCS6A01G230600.1	Wheat	nucleus	33.42	20.3
GSMUA_Achr9P12240_001	Banana	cytosol	33.42	19.09
CDY15463	Canola	nucleus	29.32	18.94
CDY64129	Canola	nucleus	36.44	18.79
Os05t0502800-01	Rice	nucleus	34.52	18.5
Solyc07g054460.2.1	Tomato	nucleus	39.18	18.38
PGSC0003DMT400047290	Potato	nucleus	37.26	18.3
HORVU6Hr1G056850.1	Barley	plastid	33.42	17.5
TraesCS6D01G204400.1	Wheat	mitochondrion, nucleus	32.88	17.27
EES19773	Sorghum	nucleus	33.42	16.69
Zm00001d038622_P001	Maize	plastid	33.42	16.25
CDY51392	Canola	nucleus	30.68	16.07
AT1G03530.1	Thale cress	nucleus	33.7	15.36
TraesCS1A01G322700.1	Wheat	plastid	35.34	14.74
TraesCS1B01G335000.1	Wheat	cytosol, mitochondrion	35.34	14.35
TraesCS1D01G323100.1	Wheat	cytosol	35.34	13.92
HORVU1Hr1G065830.1	Barley	extracellular, nucleus, plastid	35.07	13.85

Protein Annotations

EMBL:ACUP02004083	EnsemblPlants:KRH56025	EnsemblPlantsGene:GLYMA_06G297000	Gene3D:2.40.10.230	GO:GO:0001522	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0042254	InterPro:Gar1/Naf1_Cbf5-bd_sf	InterPro:H/ACA_rnp_Gar1/Naf1
InterPro:IPR038664	InterPro:Transl_B-barrel_sf	PANTHER:PTHR31633	PFAM:PF04410	ProteinID:KRH56025	ProteinID:KRH56025.1
SEG:seg	SUPFAM:SSF50447	UniParc:UPI000295866B	UniProt:K7KY63	MapMan:17.1.1.2.2.1.4	:

Description

hypothetical protein

Coordinates

chr6:+:48622541..48625209

Molecular Weight (calculated)

40195.4 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.691

Length

365 amino acids

Sequence
(BLAST)

001: MRFWNHTIKR CPVGIVMSTL GAQVIVEGVE KHDPLNEGSI LWLTESQKPL GLIDEIFGPV KNPYYVVRYN SESEVPTGIN EGTLISFVPE FADHVINNKD
101: LYRKGYDASG ADDEELSDEM EFSDDEKEAE YKRMQKQTKR GANDQNHGKK KNNRKKFSPK DVAAPSAPAA PSVPMLHHGN CPPFSSIAQG HLGGTTPLPP
201: LNAAPNFATN GVWTTGTTFP HQQQSPMLPN GFPTNGMPWY PQNPQISPQF PMPGIPFQQQ LHPNQGSLPT TMLPGMQLNM FAQSQYAAGL AGQNQIAFGM
301: GSPFPQSQPP IFAAQQGFPS TELCSERNLN FHSNGAPSQF HPRPNANRGR KTFHGAGRKG WRPPK

Best Arabidopsis Sequence Match ( AT1G03530.1 )
(BLAST)

001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G

Arabidopsis Description

ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.