Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G027370.1 | |
| HORVU2Hr1G027400.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | HORVU2Hr1G027370.1 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | HORVU2Hr1G027400.5 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 74.13 | 76.2 |
| TraesCS1A01G322700.1 | Wheat | plastid | 70.89 | 74.86 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 73.81 | 73.57 |
| Os05t0502800-01 | Rice | nucleus | 42.75 | 58.0 |
| EES19773 | Sorghum | nucleus | 42.1 | 53.21 |
| Zm00001d038622_P001 | Maize | plastid | 40.69 | 50.07 |
| HORVU6Hr1G056850.1 | Barley | plastid | 37.34 | 49.5 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 24.35 | 35.21 |
| KRH56025 | Soybean | mitochondrion, nucleus | 13.85 | 35.07 |
| KRH25503 | Soybean | nucleus | 20.35 | 32.98 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 18.51 | 31.9 |
| CDY15463 | Canola | nucleus | 17.21 | 28.14 |
| Solyc07g054460.2.1 | Tomato | nucleus | 23.38 | 27.76 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 20.89 | 27.18 |
| PGSC0003DMT400047290 | Potato | nucleus | 21.64 | 26.92 |
| CDY64129 | Canola | nucleus | 20.24 | 26.41 |
| AT1G03530.1 | Thale cress | nucleus | 22.4 | 25.84 |
| CDY51392 | Canola | nucleus | 19.37 | 25.68 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G065830.1 | EnsemblPlantsGene:HORVU1Hr1G065830 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 |
| InterPro:Transl_B-barrel_sf | ncoils:Coil | PFAM:PF04410 | SEG:seg | SUPFAM:SSF50447 | UniParc:UPI000B4803F9 |
| UniProt:A0A287G0A1 | MapMan:17.1.1.2.2.1.4 | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:469199514..469203560
Molecular Weight (calculated)
97898.9 Da
IEP (calculated)
4.369
GRAVY (calculated)
-0.688
Length
924 amino acids
Sequence
(BLAST)
(BLAST)
001: PERARDKSAH PWRRLPETPP PPPPPMARHP RPPSPSPSPP PAPPSGPDAA AFDPVEEWLL DFDFDFDQAM ASELAKSFCL ADDAAPAGVD SASVPEGGGL
101: GVDQVVKEEG EVEVAEEEGV PLEVKKEAVM LLGGGLGWEL APDQAPVLGT GDLVAGLEPV IDAEMCTAAA GDAEASTVAA VHAEARTIVD AEMSTVAAVA
201: ADTCTTMAAV DADTDTGAVA AANADTSAGA SVDAEMSTLG AVHADANTIA AAAAAADTST IAAVDAEMSS GAVVNEEVEC GGGKGEEESK DKESESSEDG
301: ELSEASSSSD DEEQPAENDE ESSEASSSSD EEVPVAKKHG GRTDMEALLE EGELMVGVED DDEDETPKGP IKSKHEVQVL PPVPKIEVQL EPHHKALPVG
401: AITAIMGERV IVEGSVEHSP LTEGSILWIT ESRTPLGIVD EIFGPVKNPY YLVRYNSAEE VPAGIGAGTT VSFVAEFADH ILNMKELYAK GYDESADHDE
501: EADEPEFSDD EQEAEYRRSQ RLAKRQTDRP HDSKKPSGDK KRAQTRGAGF RNDMPPRIHD TQTCDHQSQR RFHQSDMADR VAHQSGQQNS PMSTPRRDMP
601: PRIHDASTPD RRPQPRFHRS DTAVADSTTR QSGPQNFPMS APTMLPSISM NHAMPSPVQL ANQMGSCFIN PSQQFSQQPN MVWPGGLPPA GQPNMGVDGA
701: ALAANIMQNI LMGANQFQQY LQNQNFGGFP NGMPMAQPQF MPGGTMSANM MPFGGPMVNH PFGQASQFPM GQGNFGQFPH MAGNQGQPAG FPNTQGFGRV
801: PSQHEDGDQS PGFANMQGYG RLPSPHGDGG QPPMQFNSLP SPHGDGGQPP MQFNSLPSPH GDGGQPPMQF NSPPSPRGDG GQPRMQFNSG QFNQGNSSFR
901: GRRPQQRGGR HSPGRGGGGG RHRK
101: GVDQVVKEEG EVEVAEEEGV PLEVKKEAVM LLGGGLGWEL APDQAPVLGT GDLVAGLEPV IDAEMCTAAA GDAEASTVAA VHAEARTIVD AEMSTVAAVA
201: ADTCTTMAAV DADTDTGAVA AANADTSAGA SVDAEMSTLG AVHADANTIA AAAAAADTST IAAVDAEMSS GAVVNEEVEC GGGKGEEESK DKESESSEDG
301: ELSEASSSSD DEEQPAENDE ESSEASSSSD EEVPVAKKHG GRTDMEALLE EGELMVGVED DDEDETPKGP IKSKHEVQVL PPVPKIEVQL EPHHKALPVG
401: AITAIMGERV IVEGSVEHSP LTEGSILWIT ESRTPLGIVD EIFGPVKNPY YLVRYNSAEE VPAGIGAGTT VSFVAEFADH ILNMKELYAK GYDESADHDE
501: EADEPEFSDD EQEAEYRRSQ RLAKRQTDRP HDSKKPSGDK KRAQTRGAGF RNDMPPRIHD TQTCDHQSQR RFHQSDMADR VAHQSGQQNS PMSTPRRDMP
601: PRIHDASTPD RRPQPRFHRS DTAVADSTTR QSGPQNFPMS APTMLPSISM NHAMPSPVQL ANQMGSCFIN PSQQFSQQPN MVWPGGLPPA GQPNMGVDGA
701: ALAANIMQNI LMGANQFQQY LQNQNFGGFP NGMPMAQPQF MPGGTMSANM MPFGGPMVNH PFGQASQFPM GQGNFGQFPH MAGNQGQPAG FPNTQGFGRV
801: PSQHEDGDQS PGFANMQGYG RLPSPHGDGG QPPMQFNSLP SPHGDGGQPP MQFNSLPSPH GDGGQPPMQF NSPPSPRGDG GQPRMQFNSG QFNQGNSSFR
901: GRRPQQRGGR HSPGRGGGGG RHRK
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.